Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
..............
=====================================================================
Generated by BenchKit 2-2979
Executing tool itstools
Input is Angiogenesis-PT-15, examination is CTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r001kn-ebro-146347648400039
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-0
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-1
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-10
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-11
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-12
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-13
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-14
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-15
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-2
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-3
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-4
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-5
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-6
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-7
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-8
FORMULA_NAME Angiogenesis-PT-15-CTLCardinality-9

=== Now, execution of the tool begins

BK_START 1463982908752


its-ctl command run as :

/home/mcc/BenchKit/eclipse/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201605191313/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLCardinality.gal -t CGAL -ctl /home/mcc/execution/CTLCardinality.ctl
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,1.11554e+15,373.805,2426856,2,617019,5,1.35027e+07,6,0,220,1.34791e+07,0


Converting to forward existential form...Done !
original formula: ((AG((GStarP3>=3 + Pg>=2)) * E(AktStar<=P3k U KdStarGP3<=KdStarGStarPgStarP3)) * (KdStarGStarP3kStarP3>=3 + ((Akt>=2 + (Akt>=1 + PtP2<=KdStarGStarPgStar)) * AX(GP3<=DAGE))))
=> equivalent forward existential formula: (([(FwdU(Init,TRUE) * !((GStarP3>=3 + Pg>=2)))] = FALSE * [(Init * !(E(AktStar<=P3k U KdStarGP3<=KdStarGStarPgStarP3)))] = FALSE) * ([((Init * !(KdStarGStarP3kStarP3>=3)) * !((Akt>=2 + (Akt>=1 + PtP2<=KdStarGStarPgStar))))] = FALSE * [(EY((Init * !(KdStarGStarP3kStarP3>=3))) * !(GP3<=DAGE))] = FALSE))
Checking (exact) 0 :(([(FwdU(Init,TRUE) * !((GStarP3>=3 + Pg>=2)))] = FALSE * [(Init * !(E(AktStar<=P3k U KdStarGP3<=KdStarGStarPgStarP3)))] = FALSE) * ([((Init * !(KdStarGStarP3kStarP3>=3)) * !((Akt>=2 + (Akt>=1 + PtP2<=KdStarGStarPgStar))))] = FALSE * [(EY((Init * !(KdStarGStarP3kStarP3>=3))) * !(GP3<=DAGE))] = FALSE))
Checking (exact) 1 :([((Init * !(KdStarGStarP3kStarP3>=3)) * !((Akt>=2 + (Akt>=1 + PtP2<=KdStarGStarPgStar))))] = FALSE * [(EY((Init * !(KdStarGStarP3kStarP3>=3))) * !(GP3<=DAGE))] = FALSE)
Checking (exact) 1 :[(EY((Init * !(KdStarGStarP3kStarP3>=3))) * !(GP3<=DAGE))] = FALSE
Checking (exact) 0 :(EY((Init * !(KdStarGStarP3kStarP3>=3))) * !(GP3<=DAGE))
Checking (exact) 1 :!(GP3<=DAGE)
Checking (exact) 1 :EY((Init * !(KdStarGStarP3kStarP3>=3)))
Checking (exact) 1 :(Init * !(KdStarGStarP3kStarP3>=3))
Checking (exact) 1 :[((Init * !(KdStarGStarP3kStarP3>=3)) * !((Akt>=2 + (Akt>=1 + PtP2<=KdStarGStarPgStar))))] = FALSE
Checking (exact) 0 :((Init * !(KdStarGStarP3kStarP3>=3)) * !((Akt>=2 + (Akt>=1 + PtP2<=KdStarGStarPgStar))))
Checking (exact) 1 :!((Akt>=2 + (Akt>=1 + PtP2<=KdStarGStarPgStar)))
Checking (exact) 1 :(Init * !(KdStarGStarP3kStarP3>=3))
Checking (exact) 1 :([(FwdU(Init,TRUE) * !((GStarP3>=3 + Pg>=2)))] = FALSE * [(Init * !(E(AktStar<=P3k U KdStarGP3<=KdStarGStarPgStarP3)))] = FALSE)
Checking (exact) 1 :[(Init * !(E(AktStar<=P3k U KdStarGP3<=KdStarGStarPgStarP3)))] = FALSE
Checking (exact) 0 :(Init * !(E(AktStar<=P3k U KdStarGP3<=KdStarGStarPgStarP3)))
Checking (exact) 1 :!(E(AktStar<=P3k U KdStarGP3<=KdStarGStarPgStarP3))
Checking (exact) 1 :E(AktStar<=P3k U KdStarGP3<=KdStarGStarPgStarP3)
Checking (exact) 1 :Init
Checking (exact) 1 :[(FwdU(Init,TRUE) * !((GStarP3>=3 + Pg>=2)))] = FALSE
Checking (exact) 0 :(FwdU(Init,TRUE) * !((GStarP3>=3 + Pg>=2)))
Checking (exact) 1 :!((GStarP3>=3 + Pg>=2))
Checking (exact) 1 :FwdU(Init,TRUE)
Checking (exact) 1 :Init
(forward)formula 0,0,3156,12138608,1,0,88,6.96149e+07,17,56,1259,7.12413e+07,68
FORMULA Angiogenesis-PT-15-CTLCardinality-0 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: AG(KdStarGStarP3kStarP3P2<=KdStarGStarPgP3)
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(KdStarGStarP3kStarP3P2<=KdStarGStarPgP3))] = FALSE
Checking (exact) 0 :[(FwdU(Init,TRUE) * !(KdStarGStarP3kStarP3P2<=KdStarGStarPgP3))] = FALSE
Checking (exact) 0 :(FwdU(Init,TRUE) * !(KdStarGStarP3kStarP3P2<=KdStarGStarPgP3))
Checking (exact) 1 :!(KdStarGStarP3kStarP3P2<=KdStarGStarPgP3)
Checking (exact) 1 :FwdU(Init,TRUE)
Checking (exact) 1 :Init
(forward)formula 1,0,3174.6,12138608,1,0,88,6.96149e+07,19,56,1292,7.12413e+07,69
FORMULA Angiogenesis-PT-15-CTLCardinality-1 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: !(E((AktP3<=KdStarGStarP3kP3 + KdStarGStarP3k>=3) U KdStarGStarP3kStar>=3))
=> equivalent forward existential formula: [(FwdU(Init,(AktP3<=KdStarGStarP3kP3 + KdStarGStarP3k>=3)) * KdStarGStarP3kStar>=3)] = FALSE
Checking (exact) 0 :[(FwdU(Init,(AktP3<=KdStarGStarP3kP3 + KdStarGStarP3k>=3)) * KdStarGStarP3kStar>=3)] = FALSE
Checking (exact) 0 :(FwdU(Init,(AktP3<=KdStarGStarP3kP3 + KdStarGStarP3k>=3)) * KdStarGStarP3kStar>=3)
Checking (exact) 1 :KdStarGStarP3kStar>=3
Checking (exact) 1 :FwdU(Init,(AktP3<=KdStarGStarP3kP3 + KdStarGStarP3k>=3))
Checking (exact) 1 :Init
Hit Full ! (commute/partial/dont) 51/0/13
COULD_NOT_COMPUTE

BK_STOP 1463986424407

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ CTLCardinality = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution CTLCardinality -its
+ ulimit -s 65536
+ java -Dosgi.requiredJavaVersion=1.6 -XX:MaxPermSize=512m -Xss8m -Xms40m -Xmx8192m -Declipse.pde.launch=true -Dfile.encoding=UTF-8 -classpath /home/mcc/BenchKit//eclipse/plugins/org.eclipse.equinox.launcher_1.3.100.v20150511-1540.jar org.eclipse.equinox.launcher.Main -application fr.lip6.move.gal.application.pnmcc -data /home/mcc/BenchKit//workspace -os linux -ws gtk -arch x86_64 -nl en_US -consoleLog -pnfolder /home/mcc/execution -examination CTLCardinality -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its
Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=512m; support was removed in 8.0
May 23, 2016 5:55:13 AM fr.lip6.move.gal.application.Application transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 23, 2016 5:55:13 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 60 ms
May 23, 2016 5:55:13 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 39 places.
May 23, 2016 5:55:14 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 64 transitions.
May 23, 2016 5:55:14 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 108 ms
May 23, 2016 5:55:14 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/CTLCardinality.gal : 19 ms
May 23, 2016 5:55:14 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /home/mcc/execution/CTLCardinality.ctl : 2 ms
May 23, 2016 6:53:41 AM fr.lip6.move.gal.itstools.ProcessController$1 run
WARNING: null
java.io.IOException: Pipe broken
at java.io.PipedInputStream.read(PipedInputStream.java:321)
at java.io.PipedInputStream.read(PipedInputStream.java:377)
at sun.nio.cs.StreamDecoder.readBytes(StreamDecoder.java:284)
at sun.nio.cs.StreamDecoder.implRead(StreamDecoder.java:326)
at sun.nio.cs.StreamDecoder.read(StreamDecoder.java:178)
at java.io.InputStreamReader.read(InputStreamReader.java:184)
at java.io.BufferedReader.fill(BufferedReader.java:161)
at java.io.BufferedReader.readLine(BufferedReader.java:324)
at java.io.BufferedReader.readLine(BufferedReader.java:389)
at fr.lip6.move.gal.application.Application$ITSInterpreter.run(Application.java:460)
at java.lang.Thread.run(Thread.java:745)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-15"
export BK_EXAMINATION="CTLCardinality"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/users/gast00/fkordon/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-15.tgz
mv Angiogenesis-PT-15 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2979"
echo " Executing tool itstools"
echo " Input is Angiogenesis-PT-15, examination is CTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r001kn-ebro-146347648400039"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;