Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
................................
=====================================================================
Generated by BenchKit 2-2265
Executing tool marcie
Input is S_MAPK-PT-160, examination is ReachabilityBounds
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r162st-ebro-143319441300775
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME MAPK-PT-160-ReachabilityBounds-0
FORMULA_NAME MAPK-PT-160-ReachabilityBounds-1
FORMULA_NAME MAPK-PT-160-ReachabilityBounds-10
FORMULA_NAME MAPK-PT-160-ReachabilityBounds-11
FORMULA_NAME MAPK-PT-160-ReachabilityBounds-12
FORMULA_NAME MAPK-PT-160-ReachabilityBounds-13
FORMULA_NAME MAPK-PT-160-ReachabilityBounds-14
FORMULA_NAME MAPK-PT-160-ReachabilityBounds-15
FORMULA_NAME MAPK-PT-160-ReachabilityBounds-2
FORMULA_NAME MAPK-PT-160-ReachabilityBounds-3
FORMULA_NAME MAPK-PT-160-ReachabilityBounds-4
FORMULA_NAME MAPK-PT-160-ReachabilityBounds-5
FORMULA_NAME MAPK-PT-160-ReachabilityBounds-6
FORMULA_NAME MAPK-PT-160-ReachabilityBounds-7
FORMULA_NAME MAPK-PT-160-ReachabilityBounds-8
FORMULA_NAME MAPK-PT-160-ReachabilityBounds-9

=== Now, execution of the tool begins

BK_START 1433382464489

Model: S_MAPK-PT-160
reachability algorithm:
Saturation-based algorithm
variable ordering algorithm:
Calculated like in [Noa99]
--memory=6 --suppress --rs-algorithm=3 --place-order=5

Marcie rev. 1429:1432M (built: crohr on 2014-10-22)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=ReachabilityBounds.xml --memory=6 --suppress --rs-algorithm=3 --place-order=5

parse successfull
net created successfully

(NrP: 22 NrTr: 30 NrArc: 90)

net check time: 0m0sec

parse formulas successfull
formulas created successfully
place and transition orderings generation:0m0sec

init dd package: 0m5sec


RS generation: 2m1sec


-> reachability set: #nodes 1290482 (1.3e+06) #states 106,396,433,139,394,621,907,453 (23)



starting MCC model checker
--------------------------

checking: [[[maxVal(ERKP_MEKPP)<=1 & maxVal(RafP_Phase1)<=3] & maxVal(MEKPP_Phase2)<=2] & maxVal(RasGTP)<=2]
normalized: [maxVal(RasGTP)<=2 & [maxVal(MEKPP_Phase2)<=2 & [maxVal(ERKP_MEKPP)<=1 & maxVal(RafP_Phase1)<=3]]]

abstracting: (120<=3) states: 0
abstracting: (80<=1) states: 0
abstracting: (80<=2) states: 0
abstracting: (40<=2) states: 0
-> the formula is FALSE

FORMULA MAPK-PT-160-ReachabilityBounds-0 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: maxVal(ERK_MEKPP)<=2
normalized: maxVal(ERK_MEKPP)<=2

abstracting: (80<=2) states: 0
-> the formula is FALSE

FORMULA MAPK-PT-160-ReachabilityBounds-1 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: [[maxVal(MEKP_RafP)<=1 & maxVal(ERK_MEKPP)<=3] & maxVal(ERKPP)<=3]
normalized: [maxVal(ERKPP)<=3 & [maxVal(MEKP_RafP)<=1 & maxVal(ERK_MEKPP)<=3]]

abstracting: (80<=3) states: 0
abstracting: (80<=1) states: 0
abstracting: (120<=3) states: 0
-> the formula is FALSE

FORMULA MAPK-PT-160-ReachabilityBounds-2 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: [[[[[maxVal(Raf)<=2 & maxVal(RafP)<=3] & maxVal(RasGTP)<=1] & maxVal(MEKP)<=2] & maxVal(ERK_MEKPP)<=3] & maxVal(ERKPP)<=1]
normalized: [maxVal(ERKPP)<=1 & [maxVal(ERK_MEKPP)<=3 & [maxVal(MEKP)<=2 & [maxVal(RasGTP)<=1 & [maxVal(Raf)<=2 & maxVal(RafP)<=3]]]]]

abstracting: (160<=3) states: 0
abstracting: (160<=2) states: 0
abstracting: (40<=1) states: 0
abstracting: (80<=2) states: 0
abstracting: (80<=3) states: 0
abstracting: (120<=1) states: 0
-> the formula is FALSE

FORMULA MAPK-PT-160-ReachabilityBounds-3 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: maxVal(Raf_RasGTP)<=2
normalized: maxVal(Raf_RasGTP)<=2

abstracting: (40<=2) states: 0
-> the formula is FALSE

FORMULA MAPK-PT-160-ReachabilityBounds-4 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: [maxVal(ERKPP_Phase3)<=1 & [maxVal(RafP)<=1 & [[maxVal(MEKP)<=1 & maxVal(ERKP_Phase3)<=3] & maxVal(ERKP_Phase3)<=2]]]
normalized: [maxVal(ERKPP_Phase3)<=1 & [maxVal(RafP)<=1 & [maxVal(ERKP_Phase3)<=2 & [maxVal(MEKP)<=1 & maxVal(ERKP_Phase3)<=3]]]]

abstracting: (120<=3) states: 0
abstracting: (80<=1) states: 0
abstracting: (120<=2) states: 0
abstracting: (160<=1) states: 0
abstracting: (120<=1) states: 0
-> the formula is FALSE

FORMULA MAPK-PT-160-ReachabilityBounds-5 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: maxVal(ERKP_MEKPP)<=2
normalized: maxVal(ERKP_MEKPP)<=2

abstracting: (80<=2) states: 0
-> the formula is FALSE

FORMULA MAPK-PT-160-ReachabilityBounds-6 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: [maxVal(Phase1)<=3 & maxVal(MEKP)<=3]
normalized: [maxVal(Phase1)<=3 & maxVal(MEKP)<=3]

abstracting: (80<=3) states: 0
abstracting: (120<=3) states: 0
-> the formula is FALSE

FORMULA MAPK-PT-160-ReachabilityBounds-7 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: [[[[maxVal(MEK)<=1 & [maxVal(Raf_RasGTP)<=1 & maxVal(MEKP)<=2]] & maxVal(Raf_RasGTP)<=1] & maxVal(MEKP)<=1] & [[maxVal(Raf_RasGTP)<=3 & [[maxVal(ERK)<=1 & maxVal(MEKP_RafP)<=3] & maxVal(ERKPP_Phase3)<=2]] & [[[[maxVal(RasGTP)<=1 & maxVal(Raf_RasGTP)<=2] & maxVal(ERKP_MEKPP)<=1] & maxVal(RafP_Phase1)<=1] & [[maxVal(MEKPP_Phase2)<=2 & maxVal(ERKP_Phase3)<=2] & maxVal(Raf)<=2]]]]
normalized: [[maxVal(MEKP)<=1 & [maxVal(Raf_RasGTP)<=1 & [maxVal(MEK)<=1 & [maxVal(Raf_RasGTP)<=1 & maxVal(MEKP)<=2]]]] & [[maxVal(Raf_RasGTP)<=3 & [maxVal(ERKPP_Phase3)<=2 & [maxVal(ERK)<=1 & maxVal(MEKP_RafP)<=3]]] & [[maxVal(Raf)<=2 & [maxVal(MEKPP_Phase2)<=2 & maxVal(ERKP_Phase3)<=2]] & [maxVal(RafP_Phase1)<=1 & [maxVal(ERKP_MEKPP)<=1 & [maxVal(RasGTP)<=1 & maxVal(Raf_RasGTP)<=2]]]]]]

abstracting: (40<=2) states: 0
abstracting: (40<=1) states: 0
abstracting: (80<=1) states: 0
abstracting: (120<=1) states: 0
abstracting: (120<=2) states: 0
abstracting: (80<=2) states: 0
abstracting: (160<=2) states: 0
abstracting: (80<=3) states: 0
abstracting: (120<=1) states: 0
abstracting: (120<=2) states: 0
abstracting: (40<=3) states: 0
abstracting: (80<=2) states: 0
abstracting: (40<=1) states: 0
abstracting: (80<=1) states: 0
abstracting: (40<=1) states: 0
abstracting: (80<=1) states: 0
-> the formula is FALSE

FORMULA MAPK-PT-160-ReachabilityBounds-8 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: maxVal(ERKP_MEKPP)<=3
normalized: maxVal(ERKP_MEKPP)<=3

abstracting: (80<=3) states: 0
-> the formula is FALSE

FORMULA MAPK-PT-160-ReachabilityBounds-9 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: [maxVal(Phase2)<=1 & [[maxVal(RasGTP)<=3 & [maxVal(MEKP_RafP)<=3 & [maxVal(MEKP_RafP)<=1 & maxVal(MEKPP)<=2]]] & maxVal(ERKPP_Phase3)<=2]]
normalized: [maxVal(Phase2)<=1 & [maxVal(ERKPP_Phase3)<=2 & [maxVal(RasGTP)<=3 & [maxVal(MEKP_RafP)<=3 & [maxVal(MEKP_RafP)<=1 & maxVal(MEKPP)<=2]]]]]

abstracting: (80<=2) states: 0
abstracting: (80<=1) states: 0
abstracting: (80<=3) states: 0
abstracting: (40<=3) states: 0
abstracting: (120<=2) states: 0
abstracting: (80<=1) states: 0
-> the formula is FALSE

FORMULA MAPK-PT-160-ReachabilityBounds-10 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: [maxVal(ERKP)<=3 & maxVal(ERKPP)<=3]
normalized: [maxVal(ERKP)<=3 & maxVal(ERKPP)<=3]

abstracting: (120<=3) states: 0
abstracting: (120<=3) states: 0
-> the formula is FALSE

FORMULA MAPK-PT-160-ReachabilityBounds-11 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: [maxVal(ERKPP)<=2 & maxVal(ERK)<=2]
normalized: [maxVal(ERKPP)<=2 & maxVal(ERK)<=2]

abstracting: (120<=2) states: 0
abstracting: (120<=2) states: 0
-> the formula is FALSE

FORMULA MAPK-PT-160-ReachabilityBounds-12 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: maxVal(MEKPP_Phase2)<=3
normalized: maxVal(MEKPP_Phase2)<=3

abstracting: (80<=3) states: 0
-> the formula is FALSE

FORMULA MAPK-PT-160-ReachabilityBounds-13 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: [maxVal(MEKP_RafP)<=3 & maxVal(MEK_RafP)<=3]
normalized: [maxVal(MEKP_RafP)<=3 & maxVal(MEK_RafP)<=3]

abstracting: (80<=3) states: 0
abstracting: (80<=3) states: 0
-> the formula is FALSE

FORMULA MAPK-PT-160-ReachabilityBounds-14 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: [[maxVal(ERK_MEKPP)<=2 & maxVal(Phase3)<=3] & maxVal(ERKP_Phase3)<=1]
normalized: [maxVal(ERKP_Phase3)<=1 & [maxVal(ERK_MEKPP)<=2 & maxVal(Phase3)<=3]]

abstracting: (120<=3) states: 0
abstracting: (80<=2) states: 0
abstracting: (120<=1) states: 0
-> the formula is FALSE

FORMULA MAPK-PT-160-ReachabilityBounds-15 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec


Total processing time: 6m41sec


BK_STOP 1433382866533

--------------------
content from stderr:

check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m0sec

780 5229 8179 15636 261582 492615 739293 970858 1217964 1254916 1264705 1272027 1275728 1286957
iterations count:14555 (485), effective:2240 (74)

initing FirstDep: 0m0sec

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_MAPK-PT-160"
export BK_EXAMINATION="ReachabilityBounds"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/users/gast00/fkordon/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_MAPK-PT-160.tgz
mv S_MAPK-PT-160 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2265"
echo " Executing tool marcie"
echo " Input is S_MAPK-PT-160, examination is ReachabilityBounds"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r162st-ebro-143319441300775"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityBounds" = "ReachabilityComputeBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityBounds" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityBounds.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityBounds.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityBounds.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityBounds.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;