About the Execution of Marcie for S_Angiogenesis-PT-15
Execution Summary | |||||
Max Memory Used (MB) |
Time wait (ms) | CPU Usage (ms) | I/O Wait (ms) | Computed Result | Execution Status |
4789.930 | 186562.00 | 186029.00 | 20.20 | FFFFFFFFFFFFFFFF | normal |
Execution Chart
We display below the execution chart for this examination (boot time has been removed).
Trace from the execution
Waiting for the VM to be ready (probing ssh)
..............................................................................................................................................................................................................................................................................................................................
=====================================================================
Generated by BenchKit 2-2265
Executing tool marcie
Input is S_Angiogenesis-PT-15, examination is ReachabilityBounds
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r120st-ebro-143297419400060
=====================================================================
--------------------
content from stdout:
=== Data for post analysis generated by BenchKit (invocation template)
The expected result is a vector of booleans
BOOL_VECTOR
here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-15-ReachabilityBounds-0
FORMULA_NAME Angiogenesis-PT-15-ReachabilityBounds-1
FORMULA_NAME Angiogenesis-PT-15-ReachabilityBounds-10
FORMULA_NAME Angiogenesis-PT-15-ReachabilityBounds-11
FORMULA_NAME Angiogenesis-PT-15-ReachabilityBounds-12
FORMULA_NAME Angiogenesis-PT-15-ReachabilityBounds-13
FORMULA_NAME Angiogenesis-PT-15-ReachabilityBounds-14
FORMULA_NAME Angiogenesis-PT-15-ReachabilityBounds-15
FORMULA_NAME Angiogenesis-PT-15-ReachabilityBounds-2
FORMULA_NAME Angiogenesis-PT-15-ReachabilityBounds-3
FORMULA_NAME Angiogenesis-PT-15-ReachabilityBounds-4
FORMULA_NAME Angiogenesis-PT-15-ReachabilityBounds-5
FORMULA_NAME Angiogenesis-PT-15-ReachabilityBounds-6
FORMULA_NAME Angiogenesis-PT-15-ReachabilityBounds-7
FORMULA_NAME Angiogenesis-PT-15-ReachabilityBounds-8
FORMULA_NAME Angiogenesis-PT-15-ReachabilityBounds-9
=== Now, execution of the tool begins
BK_START 1433155633986
Model: S_Angiogenesis-PT-15
reachability algorithm:
Saturation-based algorithm
variable ordering algorithm:
Calculated like in [Noa99]
--memory=6 --suppress --rs-algorithm=3 --place-order=5
Marcie rev. 1429:1432M (built: crohr on 2014-10-22)
A model checker for Generalized Stochastic Petri nets
authors: Alex Tovchigrechko (IDD package and CTL model checking)
Martin Schwarick (Symbolic numerical analysis and CSL model checking)
Christian Rohr (Simulative and approximative numerical model checking)
marcie@informatik.tu-cottbus.de
called as: marcie --net-file=model.pnml --mcc-file=ReachabilityBounds.xml --memory=6 --suppress --rs-algorithm=3 --place-order=5
parse successfull
net created successfully
(NrP: 39 NrTr: 64 NrArc: 185)
net check time: 0m0sec
parse formulas successfull
formulas created successfully
place and transition orderings generation:0m0sec
init dd package: 0m5sec
RS generation: 2m10sec
-> reachability set: #nodes 187406 (1.9e+05) #states 1,115,538,966,669,107 (15)
starting MCC model checker
--------------------------
checking: [maxVal(GStarP3)<=1 & maxVal(Gab1)<=1]
normalized: [maxVal(GStarP3)<=1 & maxVal(Gab1)<=1]
abstracting: (15<=1) states: 0
abstracting: (15<=1) states: 0
-> the formula is FALSE
FORMULA Angiogenesis-PT-15-ReachabilityBounds-0 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT
MC time: 0m0sec
checking: maxVal(KdStarGP3)<=3
normalized: maxVal(KdStarGP3)<=3
abstracting: (14<=3) states: 0
-> the formula is FALSE
FORMULA Angiogenesis-PT-15-ReachabilityBounds-1 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT
MC time: 0m0sec
checking: maxVal(KdStarPgStarP2)<=3
normalized: maxVal(KdStarPgStarP2)<=3
abstracting: (15<=3) states: 0
-> the formula is FALSE
FORMULA Angiogenesis-PT-15-ReachabilityBounds-2 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT
MC time: 0m0sec
checking: maxVal(KdStarPgStar)<=1
normalized: maxVal(KdStarPgStar)<=1
abstracting: (15<=1) states: 0
-> the formula is FALSE
FORMULA Angiogenesis-PT-15-ReachabilityBounds-3 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT
MC time: 0m0sec
checking: [maxVal(KdStarG)<=2 & [maxVal(KdStar)<=3 & [maxVal(GP3)<=2 & [[maxVal(PtP3)<=2 & [maxVal(KdStarPgStar)<=3 & maxVal(KdStarGP3)<=2]] & [maxVal(PtP3)<=1 & [maxVal(KdStarGStarP3kP3)<=2 & maxVal(KdStarGStarPgStarP2)<=3]]]]]]
normalized: [maxVal(KdStarG)<=2 & [maxVal(KdStar)<=3 & [maxVal(GP3)<=2 & [[maxVal(PtP3)<=2 & [maxVal(KdStarPgStar)<=3 & maxVal(KdStarGP3)<=2]] & [maxVal(PtP3)<=1 & [maxVal(KdStarGStarP3kP3)<=2 & maxVal(KdStarGStarPgStarP2)<=3]]]]]]
abstracting: (15<=3) states: 0
abstracting: (15<=2) states: 0
abstracting: (15<=1) states: 0
abstracting: (14<=2) states: 0
abstracting: (15<=3) states: 0
abstracting: (15<=2) states: 0
abstracting: (14<=2) states: 0
abstracting: (15<=3) states: 0
abstracting: (15<=2) states: 0
-> the formula is FALSE
FORMULA Angiogenesis-PT-15-ReachabilityBounds-4 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT
MC time: 0m0sec
checking: [[[maxVal(KdStarGStarPgStarP3)<=2 & maxVal(KdStarPg)<=2] & [[maxVal(Pg)<=3 & [maxVal(GStarP3kP3)<=2 & maxVal(GP3)<=2]] & [maxVal(KdStarPg)<=2 & maxVal(KdStarPgStar)<=3]]] & maxVal(KdStarGStarP3)<=3]
normalized: [maxVal(KdStarGStarP3)<=3 & [[[maxVal(KdStarPg)<=2 & maxVal(KdStarPgStar)<=3] & [maxVal(Pg)<=3 & [maxVal(GStarP3kP3)<=2 & maxVal(GP3)<=2]]] & [maxVal(KdStarGStarPgStarP3)<=2 & maxVal(KdStarPg)<=2]]]
abstracting: (15<=2) states: 0
abstracting: (15<=2) states: 0
abstracting: (14<=2) states: 0
abstracting: (15<=2) states: 0
abstracting: (15<=3) states: 0
abstracting: (15<=3) states: 0
abstracting: (15<=2) states: 0
abstracting: (15<=3) states: 0
-> the formula is FALSE
FORMULA Angiogenesis-PT-15-ReachabilityBounds-5 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT
MC time: 0m0sec
checking: [[maxVal(KdStarG)<=2 & [[[maxVal(Pip3)<=2 & maxVal(GStarP3kP3)<=3] & maxVal(GP3)<=3] & maxVal(Pip3)<=3]] & maxVal(KdStarPg)<=1]
normalized: [maxVal(KdStarPg)<=1 & [maxVal(KdStarG)<=2 & [maxVal(Pip3)<=3 & [maxVal(GP3)<=3 & [maxVal(Pip3)<=2 & maxVal(GStarP3kP3)<=3]]]]]
abstracting: (15<=3) states: 0
abstracting: (15<=2) states: 0
abstracting: (14<=3) states: 0
abstracting: (15<=3) states: 0
abstracting: (15<=2) states: 0
abstracting: (15<=1) states: 0
-> the formula is FALSE
FORMULA Angiogenesis-PT-15-ReachabilityBounds-6 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT
MC time: 0m0sec
checking: maxVal(KdStarGStarPg)<=3
normalized: maxVal(KdStarGStarPg)<=3
abstracting: (15<=3) states: 0
-> the formula is FALSE
FORMULA Angiogenesis-PT-15-ReachabilityBounds-7 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT
MC time: 0m0sec
checking: maxVal(KdStarGStarP3kStarP2)<=1
normalized: maxVal(KdStarGStarP3kStarP2)<=1
abstracting: (15<=1) states: 0
-> the formula is FALSE
FORMULA Angiogenesis-PT-15-ReachabilityBounds-8 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT
MC time: 0m0sec
checking: maxVal(PtP2)<=2
normalized: maxVal(PtP2)<=2
abstracting: (15<=2) states: 0
-> the formula is FALSE
FORMULA Angiogenesis-PT-15-ReachabilityBounds-9 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT
MC time: 0m0sec
checking: maxVal(Akt)<=3
normalized: maxVal(Akt)<=3
abstracting: (15<=3) states: 0
-> the formula is FALSE
FORMULA Angiogenesis-PT-15-ReachabilityBounds-10 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT
MC time: 0m0sec
checking: [maxVal(GP3)<=1 & [maxVal(KdStarGStarP3)<=3 & maxVal(AktP3)<=3]]
normalized: [maxVal(GP3)<=1 & [maxVal(KdStarGStarP3)<=3 & maxVal(AktP3)<=3]]
abstracting: (15<=3) states: 0
abstracting: (15<=3) states: 0
abstracting: (14<=1) states: 0
-> the formula is FALSE
FORMULA Angiogenesis-PT-15-ReachabilityBounds-11 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT
MC time: 0m0sec
checking: [maxVal(P3k)<=3 & [maxVal(PtP3)<=3 & maxVal(PtP3P2)<=1]]
normalized: [maxVal(P3k)<=3 & [maxVal(PtP3)<=3 & maxVal(PtP3P2)<=1]]
abstracting: (7<=1) states: 0
abstracting: (15<=3) states: 0
abstracting: (15<=3) states: 0
-> the formula is FALSE
FORMULA Angiogenesis-PT-15-ReachabilityBounds-12 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT
MC time: 0m0sec
checking: [maxVal(KdStarGStar)<=3 & [maxVal(KdStarPgStarP2)<=2 & [[maxVal(KdStarGStarPgStarP2)<=1 & [[maxVal(KdStar)<=2 & maxVal(PtP3)<=3] & [maxVal(KdStarPgStarP2)<=3 & maxVal(Enz)<=3]]] & maxVal(Pip2)<=1]]]
normalized: [maxVal(KdStarGStar)<=3 & [maxVal(KdStarPgStarP2)<=2 & [maxVal(Pip2)<=1 & [maxVal(KdStarGStarPgStarP2)<=1 & [[maxVal(KdStar)<=2 & maxVal(PtP3)<=3] & [maxVal(KdStarPgStarP2)<=3 & maxVal(Enz)<=3]]]]]]
abstracting: (15<=3) states: 0
abstracting: (15<=3) states: 0
abstracting: (15<=3) states: 0
abstracting: (15<=2) states: 0
abstracting: (15<=1) states: 0
abstracting: (15<=1) states: 0
abstracting: (15<=2) states: 0
abstracting: (15<=3) states: 0
-> the formula is FALSE
FORMULA Angiogenesis-PT-15-ReachabilityBounds-13 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT
MC time: 0m0sec
checking: maxVal(KdStarGStarPgP3)<=1
normalized: maxVal(KdStarGStarPgP3)<=1
abstracting: (15<=1) states: 0
-> the formula is FALSE
FORMULA Angiogenesis-PT-15-ReachabilityBounds-14 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT
MC time: 0m0sec
checking: [[[[maxVal(GStarP3)<=1 & [maxVal(Pip2)<=1 & [maxVal(KdStarGStarPgStar)<=2 & maxVal(KdStar)<=3]]] & maxVal(KdStarGStarP3kStarP3)<=1] & maxVal(PtP2)<=3] & maxVal(KdStarGStarPgStarP3)<=3]
normalized: [maxVal(KdStarGStarPgStarP3)<=3 & [maxVal(PtP2)<=3 & [maxVal(KdStarGStarP3kStarP3)<=1 & [maxVal(GStarP3)<=1 & [maxVal(Pip2)<=1 & [maxVal(KdStarGStarPgStar)<=2 & maxVal(KdStar)<=3]]]]]]
abstracting: (15<=3) states: 0
abstracting: (15<=2) states: 0
abstracting: (15<=1) states: 0
abstracting: (15<=1) states: 0
abstracting: (15<=1) states: 0
abstracting: (15<=3) states: 0
abstracting: (15<=3) states: 0
-> the formula is FALSE
FORMULA Angiogenesis-PT-15-ReachabilityBounds-15 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT
MC time: 0m0sec
Total processing time: 3m6sec
BK_STOP 1433155820548
--------------------
content from stderr:
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok
initing FirstDep: 0m0sec
7655 40750 42462 42070 43302 42910 157720 319688 276519 278754 167340 209866 282798 260959 237117 210723 187144
iterations count:17483 (273), effective:1467 (22)
initing FirstDep: 0m0sec
Sequence of Actions to be Executed by the VM
This is useful if one wants to reexecute the tool in the VM from the submitted image disk.
set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_Angiogenesis-PT-15"
export BK_EXAMINATION="ReachabilityBounds"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/users/gast00/fkordon/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
# this is specific to your benchmark or test
export BIN_DIR="$HOME/BenchKit/bin"
# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi
tar xzf /home/mcc/BenchKit/INPUTS/S_Angiogenesis-PT-15.tgz
mv S_Angiogenesis-PT-15 execution
# this is for BenchKit: explicit launching of the test
cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2265"
echo " Executing tool marcie"
echo " Input is S_Angiogenesis-PT-15, examination is ReachabilityBounds"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r120st-ebro-143297419400060"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityBounds" = "ReachabilityComputeBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityBounds" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityBounds.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityBounds.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityBounds.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;