Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
................
=====================================================================
Generated by BenchKit 2-2265
Executing tool marcie
Input is S_Angiogenesis-PT-05, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r120st-ebro-143297419300038
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-0
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-1
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-10
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-11
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-12
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-13
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-14
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-15
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-2
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-3
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-4
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-5
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-6
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-7
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-8
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-9

=== Now, execution of the tool begins

BK_START 1433155606794

Model: S_Angiogenesis-PT-05
reachability algorithm:
Saturation-based algorithm
variable ordering algorithm:
Calculated like in [Noa99]
--memory=6 --suppress --rs-algorithm=3 --place-order=5

Marcie rev. 1429:1432M (built: crohr on 2014-10-22)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=ReachabilityFireability.xml --memory=6 --suppress --rs-algorithm=3 --place-order=5

parse successfull
net created successfully

(NrP: 39 NrTr: 64 NrArc: 185)

net check time: 0m0sec

parse formulas successfull
formulas created successfully
place and transition orderings generation:0m0sec

init dd package: 0m5sec


RS generation: 0m0sec


-> reachability set: #nodes 5306 (5.3e+03) #states 42,734,935 (7)



starting MCC model checker
--------------------------

checking: EF [IS-FIREABLE [k9]]
normalized: E [true U IS-FIREABLE [k9]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-05-ReachabilityFireability-0 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: EF [[~ [[[IS-FIREABLE [k43] & IS-FIREABLE [k24]] & ~ [IS-FIREABLE [k40]]]] & IS-FIREABLE [k27]]]
normalized: E [true U [IS-FIREABLE [k27] & ~ [[[IS-FIREABLE [k43] & IS-FIREABLE [k24]] & ~ [IS-FIREABLE [k40]]]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-05-ReachabilityFireability-1 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: EF [[[[IS-FIREABLE [k8] & IS-FIREABLE [t1]] & [[IS-FIREABLE [k34] & IS-FIREABLE [k44]] | IS-FIREABLE [k20]]] | IS-FIREABLE [k46]]]
normalized: E [true U [IS-FIREABLE [k46] | [[IS-FIREABLE [k20] | [IS-FIREABLE [k34] & IS-FIREABLE [k44]]] & [IS-FIREABLE [k8] & IS-FIREABLE [t1]]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-05-ReachabilityFireability-2 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m1sec

checking: EF [[[IS-FIREABLE [k4] & ~ [[IS-FIREABLE [k48] | IS-FIREABLE [k18]]]] & ~ [[[IS-FIREABLE [k11] & IS-FIREABLE [k63]] & IS-FIREABLE [k5]]]]]
normalized: E [true U [[IS-FIREABLE [k4] & ~ [[IS-FIREABLE [k48] | IS-FIREABLE [k18]]]] & ~ [[IS-FIREABLE [k5] & [IS-FIREABLE [k11] & IS-FIREABLE [k63]]]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-05-ReachabilityFireability-3 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: EF [[[[~ [IS-FIREABLE [k50]] & ~ [IS-FIREABLE [k38]]] & [[IS-FIREABLE [k11] & IS-FIREABLE [k38]] & [IS-FIREABLE [k4] | IS-FIREABLE [k26]]]] | [IS-FIREABLE [k20] & IS-FIREABLE [k52]]]]
normalized: E [true U [[IS-FIREABLE [k20] & IS-FIREABLE [k52]] | [[[IS-FIREABLE [k4] | IS-FIREABLE [k26]] & [IS-FIREABLE [k11] & IS-FIREABLE [k38]]] & [~ [IS-FIREABLE [k38]] & ~ [IS-FIREABLE [k50]]]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-05-ReachabilityFireability-4 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: EF [[[[~ [IS-FIREABLE [k62]] & IS-FIREABLE [k50]] & IS-FIREABLE [k36]] & ~ [~ [IS-FIREABLE [k55]]]]]
normalized: E [true U [IS-FIREABLE [k55] & [IS-FIREABLE [k36] & [IS-FIREABLE [k50] & ~ [IS-FIREABLE [k62]]]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-05-ReachabilityFireability-5 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m1sec

checking: EF [[IS-FIREABLE [k12] & [IS-FIREABLE [t0] | ~ [[IS-FIREABLE [k7] | IS-FIREABLE [k34]]]]]]
normalized: E [true U [IS-FIREABLE [k12] & [IS-FIREABLE [t0] | ~ [[IS-FIREABLE [k7] | IS-FIREABLE [k34]]]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-05-ReachabilityFireability-6 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: EF [IS-FIREABLE [k9]]
normalized: E [true U IS-FIREABLE [k9]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-05-ReachabilityFireability-7 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: AG [~ [[~ [IS-FIREABLE [k52]] & [[IS-FIREABLE [k35] & IS-FIREABLE [k30]] & IS-FIREABLE [k44]]]]]
normalized: ~ [E [true U [[IS-FIREABLE [k44] & [IS-FIREABLE [k35] & IS-FIREABLE [k30]]] & ~ [IS-FIREABLE [k52]]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-05-ReachabilityFireability-8 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: EF [[~ [~ [[IS-FIREABLE [k55] & IS-FIREABLE [k60]]]] & [[[IS-FIREABLE [k6] & IS-FIREABLE [k61]] | IS-FIREABLE [k41]] & ~ [[IS-FIREABLE [k41] & IS-FIREABLE [k34]]]]]]
normalized: E [true U [[~ [[IS-FIREABLE [k41] & IS-FIREABLE [k34]]] & [IS-FIREABLE [k41] | [IS-FIREABLE [k6] & IS-FIREABLE [k61]]]] & [IS-FIREABLE [k55] & IS-FIREABLE [k60]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-05-ReachabilityFireability-9 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: EF [[~ [[IS-FIREABLE [k57] & [IS-FIREABLE [k39] | IS-FIREABLE [k33]]]] & [[[IS-FIREABLE [k44] & IS-FIREABLE [k17]] & IS-FIREABLE [k35]] & [[IS-FIREABLE [k50] & IS-FIREABLE [k33]] | ~ [IS-FIREABLE [k21]]]]]]
normalized: E [true U [[[~ [IS-FIREABLE [k21]] | [IS-FIREABLE [k50] & IS-FIREABLE [k33]]] & [IS-FIREABLE [k35] & [IS-FIREABLE [k44] & IS-FIREABLE [k17]]]] & ~ [[IS-FIREABLE [k57] & [IS-FIREABLE [k39] | IS-FIREABLE [k33]]]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-05-ReachabilityFireability-10 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m1sec

checking: EF [[[~ [~ [IS-FIREABLE [k47]]] & [[IS-FIREABLE [k46] & IS-FIREABLE [k23]] | ~ [IS-FIREABLE [k60]]]] & IS-FIREABLE [k39]]]
normalized: E [true U [IS-FIREABLE [k39] & [IS-FIREABLE [k47] & [[IS-FIREABLE [k46] & IS-FIREABLE [k23]] | ~ [IS-FIREABLE [k60]]]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-05-ReachabilityFireability-11 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: AG [~ [[~ [~ [IS-FIREABLE [k34]]] & [~ [IS-FIREABLE [k50]] & [IS-FIREABLE [k22] & IS-FIREABLE [k17]]]]]]
normalized: ~ [E [true U [IS-FIREABLE [k34] & [[IS-FIREABLE [k22] & IS-FIREABLE [k17]] & ~ [IS-FIREABLE [k50]]]]]]

-> the formula is FALSE

FORMULA Angiogenesis-PT-05-ReachabilityFireability-12 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: EF [IS-FIREABLE [k22]]
normalized: E [true U IS-FIREABLE [k22]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-05-ReachabilityFireability-13 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: EF [IS-FIREABLE [k13]]
normalized: E [true U IS-FIREABLE [k13]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-05-ReachabilityFireability-14 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: EF [[[IS-FIREABLE [k50] | IS-FIREABLE [k26]] | [IS-FIREABLE [k51] | [[IS-FIREABLE [k17] & IS-FIREABLE [k36]] & IS-FIREABLE [k6]]]]]
normalized: E [true U [[IS-FIREABLE [k51] | [IS-FIREABLE [k6] & [IS-FIREABLE [k17] & IS-FIREABLE [k36]]]] | [IS-FIREABLE [k50] | IS-FIREABLE [k26]]]]

-> the formula is TRUE

FORMULA Angiogenesis-PT-05-ReachabilityFireability-15 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec


Total processing time: 0m21sec


BK_STOP 1433155628420

--------------------
content from stderr:

check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m0sec

2693 3141 4748 5865 5965
iterations count:5828 (91), effective:482 (7)

initing FirstDep: 0m0sec

6607
iterations count:1074 (16), effective:60 (0)
9645
iterations count:1350 (21), effective:81 (1)
12316 6675
iterations count:2157 (33), effective:160 (2)

iterations count:989 (15), effective:58 (0)
11671 6659
iterations count:2105 (32), effective:134 (2)
5965 8688
iterations count:2735 (42), effective:177 (2)
6614
iterations count:1142 (17), effective:63 (0)
6607
iterations count:1074 (16), effective:60 (0)
2642 4128 6499 6417
iterations count:4127 (64), effective:266 (4)
9952 7914
iterations count:2861 (44), effective:194 (3)
11464 6885
iterations count:2304 (36), effective:151 (2)
10531 8148
iterations count:2756 (43), effective:185 (2)
6607
iterations count:1080 (16), effective:60 (0)
5367
iterations count:1051 (16), effective:56 (0)
5932
iterations count:1068 (16), effective:60 (0)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_Angiogenesis-PT-05"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/users/gast00/fkordon/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_Angiogenesis-PT-05.tgz
mv S_Angiogenesis-PT-05 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2265"
echo " Executing tool marcie"
echo " Input is S_Angiogenesis-PT-05, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r120st-ebro-143297419300038"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "ReachabilityComputeBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;