Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
............................................
=====================================================================
Generated by BenchKit 2-2265
Executing tool itstools
Input is S_Angiogenesis-PT-50, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r117st-ebro-143297544300103
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-50-ReachabilityFireability-0
FORMULA_NAME Angiogenesis-PT-50-ReachabilityFireability-1
FORMULA_NAME Angiogenesis-PT-50-ReachabilityFireability-10
FORMULA_NAME Angiogenesis-PT-50-ReachabilityFireability-11
FORMULA_NAME Angiogenesis-PT-50-ReachabilityFireability-12
FORMULA_NAME Angiogenesis-PT-50-ReachabilityFireability-13
FORMULA_NAME Angiogenesis-PT-50-ReachabilityFireability-14
FORMULA_NAME Angiogenesis-PT-50-ReachabilityFireability-15
FORMULA_NAME Angiogenesis-PT-50-ReachabilityFireability-2
FORMULA_NAME Angiogenesis-PT-50-ReachabilityFireability-3
FORMULA_NAME Angiogenesis-PT-50-ReachabilityFireability-4
FORMULA_NAME Angiogenesis-PT-50-ReachabilityFireability-5
FORMULA_NAME Angiogenesis-PT-50-ReachabilityFireability-6
FORMULA_NAME Angiogenesis-PT-50-ReachabilityFireability-7
FORMULA_NAME Angiogenesis-PT-50-ReachabilityFireability-8
FORMULA_NAME Angiogenesis-PT-50-ReachabilityFireability-9

=== Now, execution of the tool begins

BK_START 1433137109297

!SESSION 2015-06-01 05:38:29.752 -----------------------------------------------
eclipse.buildId=4.4.2.M20150204-1700
java.version=1.8.0_45
java.vendor=Oracle Corporation
BootLoader constants: OS=linux, ARCH=x86_64, WS=gtk, NL=en_US
Framework arguments: -application fr.lip6.move.gal.application.pnmcc -pnfolder /home/mcc/execution -examination ReachabilityFireability -z3path /home/mcc/BenchKit/bin//z3-4.3.2/bin/z3
Command-line arguments: -application fr.lip6.move.gal.application.pnmcc -data /home/mcc/workspace -os linux -ws gtk -arch x86_64 -consoleLog -pnfolder /home/mcc/execution -examination ReachabilityFireability -z3path /home/mcc/BenchKit/bin//z3-4.3.2/bin/z3

!ENTRY org.eclipse.osgi 4 0 2015-06-01 05:38:33.563
!MESSAGE Application error
!STACK 1
java.lang.IllegalArgumentException: The 'no null' constraint is violated
at org.eclipse.emf.common.util.AbstractEList.validate(AbstractEList.java:97)
at org.eclipse.emf.ecore.util.EcoreEList.validate(EcoreEList.java:63)
at org.eclipse.emf.common.util.BasicEList.addUnique(BasicEList.java:418)
at org.eclipse.emf.common.notify.impl.NotifyingListImpl.doAddUnique(NotifyingListImpl.java:325)
at org.eclipse.emf.common.notify.impl.NotifyingListImpl.addUnique(NotifyingListImpl.java:309)
at org.eclipse.emf.common.util.AbstractEList.add(AbstractEList.java:303)
at fr.lip6.move.gal.logic.saxparse.PropHandler.endElement(PropHandler.java:248)
at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.endElement(AbstractSAXParser.java:609)
at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanEndElement(XMLDocumentFragmentScannerImpl.java:1782)
at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(XMLDocumentFragmentScannerImpl.java:2973)
at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:606)
at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:510)
at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:848)
at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:777)
at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:141)
at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:1213)
at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(SAXParserImpl.java:649)
at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl.parse(SAXParserImpl.java:333)
at javax.xml.parsers.SAXParser.parse(SAXParser.java:195)
at fr.lip6.move.gal.logic.saxparse.PropReader.readXMLPropertiesIntoProps(PropReader.java:40)
at fr.lip6.move.gal.logic.saxparse.PropertyParser.fileToProperties(PropertyParser.java:19)
at fr.lip6.move.gal.application.Application.start(Application.java:137)
at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:380)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:235)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:648)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:603)
at org.eclipse.equinox.launcher.Main.run(Main.java:1465)
at org.eclipse.equinox.launcher.Main.main(Main.java:1438)
An error has occurred. See the log file
/home/mcc/workspace/.metadata/.log.

BK_STOP 1433137114689

--------------------
content from stderr:

Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=512m; support was removed in 8.0
Jun 01, 2015 5:38:33 AM fr.lip6.move.gal.application.Application transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Jun 01, 2015 5:38:33 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 54 ms
Jun 01, 2015 5:38:33 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 39 places.
Jun 01, 2015 5:38:33 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 64 transitions.
Jun 01, 2015 5:38:33 AM fr.lip6.move.gal.logic.saxparse.PropHandler findTransition
WARNING: Could not find GAL transition for : t0

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_Angiogenesis-PT-50"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/users/gast00/fkordon/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_Angiogenesis-PT-50.tgz
mv S_Angiogenesis-PT-50 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2265"
echo " Executing tool itstools"
echo " Input is S_Angiogenesis-PT-50, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r117st-ebro-143297544300103"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "ReachabilityComputeBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;