fond
Model Checking Contest @ Petri Nets 2015
Bruxelles, Belgium, June 23, 2015
Execution of r117st-ebro-143297544200026
Last Updated
August 19, 2015

About the Execution of ITS-Tools for S_Angiogenesis-PT-01

Execution Summary
Max Memory
Used (MB)
Time wait (ms) CPU Usage (ms) I/O Wait (ms) Computed Result Execution
Status
309.330 5636.00 11325.00 359.60 [undef] Cannot compute

Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
..................................
=====================================================================
Generated by BenchKit 2-2265
Executing tool itstools
Input is S_Angiogenesis-PT-01, examination is ReachabilityFireabilitySimple
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r117st-ebro-143297544200026
=====================================================================


--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireabilitySimple-0
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireabilitySimple-1
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireabilitySimple-10
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireabilitySimple-11
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireabilitySimple-12
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireabilitySimple-13
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireabilitySimple-14
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireabilitySimple-15
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireabilitySimple-2
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireabilitySimple-3
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireabilitySimple-4
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireabilitySimple-5
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireabilitySimple-6
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireabilitySimple-7
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireabilitySimple-8
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireabilitySimple-9

=== Now, execution of the tool begins

BK_START 1433136876867

!SESSION 2015-06-01 05:34:37.320 -----------------------------------------------
eclipse.buildId=4.4.2.M20150204-1700
java.version=1.8.0_45
java.vendor=Oracle Corporation
BootLoader constants: OS=linux, ARCH=x86_64, WS=gtk, NL=en_US
Framework arguments: -application fr.lip6.move.gal.application.pnmcc -pnfolder /home/mcc/execution -examination ReachabilityFireabilitySimple -z3path /home/mcc/BenchKit/bin//z3-4.3.2/bin/z3
Command-line arguments: -application fr.lip6.move.gal.application.pnmcc -data /home/mcc/workspace -os linux -ws gtk -arch x86_64 -consoleLog -pnfolder /home/mcc/execution -examination ReachabilityFireabilitySimple -z3path /home/mcc/BenchKit/bin//z3-4.3.2/bin/z3

!ENTRY org.eclipse.osgi 4 0 2015-06-01 05:34:41.242
!MESSAGE Application error
!STACK 1
java.lang.IllegalArgumentException: The 'no null' constraint is violated
at org.eclipse.emf.common.util.AbstractEList.validate(AbstractEList.java:97)
at org.eclipse.emf.ecore.util.EcoreEList.validate(EcoreEList.java:63)
at org.eclipse.emf.common.util.BasicEList.addUnique(BasicEList.java:418)
at org.eclipse.emf.common.notify.impl.NotifyingListImpl.doAddUnique(NotifyingListImpl.java:325)
at org.eclipse.emf.common.notify.impl.NotifyingListImpl.addUnique(NotifyingListImpl.java:309)
at org.eclipse.emf.common.util.AbstractEList.add(AbstractEList.java:303)
at fr.lip6.move.gal.logic.saxparse.PropHandler.endElement(PropHandler.java:248)
at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.endElement(AbstractSAXParser.java:609)
at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanEndElement(XMLDocumentFragmentScannerImpl.java:1782)
at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(XMLDocumentFragmentScannerImpl.java:2973)
at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:606)
at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:510)
at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:848)
at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:777)
at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:141)
at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:1213)
at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(SAXParserImpl.java:649)
at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl.parse(SAXParserImpl.java:333)
at javax.xml.parsers.SAXParser.parse(SAXParser.java:195)
at fr.lip6.move.gal.logic.saxparse.PropReader.readXMLPropertiesIntoProps(PropReader.java:40)
at fr.lip6.move.gal.logic.saxparse.PropertyParser.fileToProperties(PropertyParser.java:19)
at fr.lip6.move.gal.application.Application.start(Application.java:137)
at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:380)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:235)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:648)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:603)
at org.eclipse.equinox.launcher.Main.run(Main.java:1465)
at org.eclipse.equinox.launcher.Main.main(Main.java:1438)
An error has occurred. See the log file
/home/mcc/workspace/.metadata/.log.

BK_STOP 1433136882503

--------------------
content from stderr:

Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=512m; support was removed in 8.0
Jun 01, 2015 5:34:40 AM fr.lip6.move.gal.application.Application transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Jun 01, 2015 5:34:40 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 52 ms
Jun 01, 2015 5:34:40 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 39 places.
Jun 01, 2015 5:34:41 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 64 transitions.
Jun 01, 2015 5:34:41 AM fr.lip6.move.gal.logic.saxparse.PropHandler findTransition
WARNING: Could not find GAL transition for : t0

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_Angiogenesis-PT-01"
export BK_EXAMINATION="ReachabilityFireabilitySimple"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/users/gast00/fkordon/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_Angiogenesis-PT-01.tgz
mv S_Angiogenesis-PT-01 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2265"
echo " Executing tool itstools"
echo " Input is S_Angiogenesis-PT-01, examination is ReachabilityFireabilitySimple"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r117st-ebro-143297544200026"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireabilitySimple" = "ReachabilityComputeBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireabilitySimple" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireabilitySimple.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireabilitySimple.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireabilitySimple.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityFireabilitySimple.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;