Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
..................
=====================================================================
Generated by BenchKit 2-2265
Executing tool classicSEQ
Input is S_Angiogenesis-PT-50, examination is ReachabilityCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r114st-ebro-143297399300100
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-0
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-1
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-10
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-11
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-12
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-13
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-14
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-15
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-2
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-3
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-4
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-5
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-6
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-7
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-8
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-9

=== Now, execution of the tool begins

BK_START 1433086238073

---> classicSEQ --- TAPAAL Classic Sequential

**********************************************
TAPAAL classicSEQ verifying ReachabilityCardinality
**********************************************

verifypn -n -r 1 -x 1 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-0: EF ( (not(((2 <= "PtP3P2") or ("KdStarGStarPgStarP3" <= "AktStar"))) and (not(("KdStarGStarP3kStar" <= "GStarP3kP3")) or (3 <= "AktP3"))) )

FORMULA Angiogenesis-PT-50-ReachabilityCardinality-0 CANNOT_COMPUTE

verifypn -n -r 1 -x 2 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-1: EF ( not(((("KdStarGStarP3kStar" <= "GStarP3kP3") and ("Pg" <= "KdStarGStarPg")) or (2 <= "Enz"))) )

FORMULA Angiogenesis-PT-50-ReachabilityCardinality-1 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


verifypn -n -r 1 -x 3 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-2: EF ( not(((("AktStar" <= "KdStarGP3") or ("DAGE" <= "PtP2")) or ((2 <= "KdStarG") and ("P3k" <= "PtP3")))) )

FORMULA Angiogenesis-PT-50-ReachabilityCardinality-2 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


verifypn -n -r 1 -x 4 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-3: not EF not ( not(not(((2 <= "KdStarPgStarP2") or (2 <= "Pg")))) )

FORMULA Angiogenesis-PT-50-ReachabilityCardinality-3 FALSE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.


verifypn -n -r 1 -x 5 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-4: EF ( ((not(("KdStarGStarP3k" <= "Pg")) or not(("Pip2" <= "PtP3"))) and ((("GStarP3" <= "KdStarGStarPgStarP3P2") and ("Pip2" <= "PtP3P2")) and ((3 <= "Pip2") and ("KdStarGStarP3k" <= "AktStar")))) )

FORMULA Angiogenesis-PT-50-ReachabilityCardinality-4 CANNOT_COMPUTE

verifypn -n -r 1 -x 6 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-5: not EF not ( ((("KdStarGStarP3kStarP3" <= "KdStarGStarP3kP3") or (("PtP3" <= "GStarPgP3") or ("KdStarGStarP3kStar" <= "KdStarGStarPg"))) or not(("KdStarGStarPgStarP2" <= "KdStarGStarPgStarP2"))) )

FORMULA Angiogenesis-PT-50-ReachabilityCardinality-5 CANNOT_COMPUTE

verifypn -n -r 1 -x 7 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-6: EF ( ((not((3 <= "Pip3")) and ((2 <= "Pten") and ("PtP3P2" <= "KdStarGStarPgP3"))) and ((("KdStarGStarP3kStarP2" <= "Gab1") and (3 <= "GStarPgP3")) and (("Gab1" <= "GStarP3") or ("P3k" <= "DAGE")))) )

FORMULA Angiogenesis-PT-50-ReachabilityCardinality-6 CANNOT_COMPUTE

verifypn -n -r 1 -x 8 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-7: not EF not ( not((not(("KdStarGStarPg" <= "Pg")) and not((3 <= "KdStarGStarPgStarP3")))) )

FORMULA Angiogenesis-PT-50-ReachabilityCardinality-7 CANNOT_COMPUTE

verifypn -n -r 1 -x 9 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-8: not EF not ( ("KdStarGStarPgP3" <= "KdStarGStarPgP3") )

FORMULA Angiogenesis-PT-50-ReachabilityCardinality-8 CANNOT_COMPUTE

verifypn -n -r 1 -x 10 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-9: not EF not ( not(((2 <= "KdStarGStarP3kStarP3P2") and not((3 <= "KdStarGStarPgStarP2")))) )

FORMULA Angiogenesis-PT-50-ReachabilityCardinality-9 CANNOT_COMPUTE

verifypn -n -r 1 -x 11 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-10: not EF not ( (("KdStarGStar" <= "Pip3") or not(((3 <= "KdStarGStarP3k") and (3 <= "KdStarGStarP3k")))) )

FORMULA Angiogenesis-PT-50-ReachabilityCardinality-10 FALSE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.


verifypn -n -r 1 -x 12 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-11: not EF not ( (1 <= "P3k") )

FORMULA Angiogenesis-PT-50-ReachabilityCardinality-11 FALSE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.


verifypn -n -r 1 -x 13 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-12: EF ( not(not(((3 <= "AktP3") and (3 <= "KdStarGStarPg")))) )

FORMULA Angiogenesis-PT-50-ReachabilityCardinality-12 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


verifypn -n -r 1 -x 14 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-13: EF ( (2 <= "KdStarGStarPgStar") )

FORMULA Angiogenesis-PT-50-ReachabilityCardinality-13 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


verifypn -n -r 1 -x 15 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-14: EF ( (not(not((2 <= "KdStarGStarPgStarP3P2"))) and (2 <= "KdStarPgStarP2")) )

FORMULA Angiogenesis-PT-50-ReachabilityCardinality-14 CANNOT_COMPUTE

verifypn -n -r 1 -x 16 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-50-ReachabilityCardinality-15: EF ( not(((("KdStarGStarPgStarP3P2" <= "DAG") or (1 <= "KdStarGStarPgStar")) and (("KdStarGStarPgStarP3" <= "GStarP3kP3") and ("KdStarGStarP3kP3" <= "AktStar")))) )

FORMULA Angiogenesis-PT-50-ReachabilityCardinality-15 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


BK_STOP 1433088586450

--------------------
content from stderr:

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_Angiogenesis-PT-50"
export BK_EXAMINATION="ReachabilityCardinality"
export BK_TOOL="classicSEQ"
export BK_RESULT_DIR="/users/gast00/fkordon/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_Angiogenesis-PT-50.tgz
mv S_Angiogenesis-PT-50 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2265"
echo " Executing tool classicSEQ"
echo " Input is S_Angiogenesis-PT-50, examination is ReachabilityCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r114st-ebro-143297399300100"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityCardinality" = "ReachabilityComputeBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;