Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
...................................................
=====================================================================
Generated by BenchKit 2-2265
Executing tool classicSEQ
Input is S_Angiogenesis-PT-50, examination is ReachabilityBounds
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r114st-ebro-143297399300099
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-50-ReachabilityBounds-0
FORMULA_NAME Angiogenesis-PT-50-ReachabilityBounds-1
FORMULA_NAME Angiogenesis-PT-50-ReachabilityBounds-10
FORMULA_NAME Angiogenesis-PT-50-ReachabilityBounds-11
FORMULA_NAME Angiogenesis-PT-50-ReachabilityBounds-12
FORMULA_NAME Angiogenesis-PT-50-ReachabilityBounds-13
FORMULA_NAME Angiogenesis-PT-50-ReachabilityBounds-14
FORMULA_NAME Angiogenesis-PT-50-ReachabilityBounds-15
FORMULA_NAME Angiogenesis-PT-50-ReachabilityBounds-2
FORMULA_NAME Angiogenesis-PT-50-ReachabilityBounds-3
FORMULA_NAME Angiogenesis-PT-50-ReachabilityBounds-4
FORMULA_NAME Angiogenesis-PT-50-ReachabilityBounds-5
FORMULA_NAME Angiogenesis-PT-50-ReachabilityBounds-6
FORMULA_NAME Angiogenesis-PT-50-ReachabilityBounds-7
FORMULA_NAME Angiogenesis-PT-50-ReachabilityBounds-8
FORMULA_NAME Angiogenesis-PT-50-ReachabilityBounds-9

=== Now, execution of the tool begins

BK_START 1433086232689

---> classicSEQ --- TAPAAL Classic Sequential

***********************************************
TAPAAL classicSEQ verifying ReachabilityBounds
***********************************************

verifypn-bounds -n -r 1 -x 1 model.pnml ReachabilityBounds.xml
Angiogenesis-PT-50-ReachabilityBounds-0: place-bound EF ( true and ("KdStarGStarP3kStar" < 0 ) )

FORMULA Angiogenesis-PT-50-ReachabilityBounds-0 CANNOT_COMPUTE

verifypn-bounds -n -r 1 -x 2 model.pnml ReachabilityBounds.xml
Angiogenesis-PT-50-ReachabilityBounds-1: place-bound EF ( true and ("Pip3" < 0 ) )

FORMULA Angiogenesis-PT-50-ReachabilityBounds-1 CANNOT_COMPUTE

verifypn-bounds -n -r 1 -x 3 model.pnml ReachabilityBounds.xml
Angiogenesis-PT-50-ReachabilityBounds-2: place-bound EF ( true and ("DAGE" < 0 ) and ("GP3" < 0 ) and ("KdStarGStarPgStarP2" < 0 ) and ("GStarP3" < 0 ) and ("KdStarGStarPgStarP3" < 0 ) and ("KdStarGStarP3k" < 0 ) and ("Pip3" < 0 ) and ("KdStarGStarP3kStarP2" < 0 ) and ("KdStarGP3" < 0 ) )

FORMULA Angiogenesis-PT-50-ReachabilityBounds-2 CANNOT_COMPUTE

verifypn-bounds -n -r 1 -x 4 model.pnml ReachabilityBounds.xml
Angiogenesis-PT-50-ReachabilityBounds-3: place-bound EF ( true and ("Gab1" < 0 ) and ("KdStarGStarP3k" < 0 ) and ("AktStar" < 0 ) and ("KdStarPgStarP2" < 0 ) and ("AktP3" < 0 ) and ("KdStarGStarPgP3" < 0 ) and ("PtP3" < 0 ) and ("DAGE" < 0 ) and ("KdStarGStarPg" < 0 ) and ("KdStarGStarPgStar" < 0 ) and ("PtP2" < 0 ) and ("KdStarGStarPgStar" < 0 ) and ("KdStarGStarP3kStar" < 0 ) and ("GP3" < 0 ) and ("DAG" < 0 ) )

FORMULA Angiogenesis-PT-50-ReachabilityBounds-3 CANNOT_COMPUTE

verifypn-bounds -n -r 1 -x 5 model.pnml ReachabilityBounds.xml
Angiogenesis-PT-50-ReachabilityBounds-4: place-bound EF ( true and ("GStarPgP3" < 0 ) )

FORMULA Angiogenesis-PT-50-ReachabilityBounds-4 CANNOT_COMPUTE

verifypn-bounds -n -r 1 -x 6 model.pnml ReachabilityBounds.xml
Angiogenesis-PT-50-ReachabilityBounds-5: place-bound EF ( true and ("KdStarGStarPgStar" < 0 ) )

FORMULA Angiogenesis-PT-50-ReachabilityBounds-5 CANNOT_COMPUTE

verifypn-bounds -n -r 1 -x 7 model.pnml ReachabilityBounds.xml
Angiogenesis-PT-50-ReachabilityBounds-6: place-bound EF ( true and ("PtP3" < 0 ) )

FORMULA Angiogenesis-PT-50-ReachabilityBounds-6 CANNOT_COMPUTE

verifypn-bounds -n -r 1 -x 8 model.pnml ReachabilityBounds.xml
Angiogenesis-PT-50-ReachabilityBounds-7: place-bound EF ( true and ("Pip3" < 0 ) )

FORMULA Angiogenesis-PT-50-ReachabilityBounds-7 CANNOT_COMPUTE

verifypn-bounds -n -r 1 -x 9 model.pnml ReachabilityBounds.xml
Angiogenesis-PT-50-ReachabilityBounds-8: place-bound EF ( true and ("KdStarGStarP3kP3" < 0 ) )

FORMULA Angiogenesis-PT-50-ReachabilityBounds-8 CANNOT_COMPUTE

verifypn-bounds -n -r 1 -x 10 model.pnml ReachabilityBounds.xml
Angiogenesis-PT-50-ReachabilityBounds-9: place-bound EF ( true and ("KdStarGP3" < 0 ) )

FORMULA Angiogenesis-PT-50-ReachabilityBounds-9 CANNOT_COMPUTE

verifypn-bounds -n -r 1 -x 11 model.pnml ReachabilityBounds.xml
Angiogenesis-PT-50-ReachabilityBounds-10: place-bound EF ( true and ("Akt" < 0 ) and ("KdStarGStarP3kStar" < 0 ) and ("KdStarGStarPgStar" < 0 ) )

FORMULA Angiogenesis-PT-50-ReachabilityBounds-10 CANNOT_COMPUTE

verifypn-bounds -n -r 1 -x 12 model.pnml ReachabilityBounds.xml
Angiogenesis-PT-50-ReachabilityBounds-11: place-bound EF ( true and ("KdStarGStarP3" < 0 ) )

FORMULA Angiogenesis-PT-50-ReachabilityBounds-11 CANNOT_COMPUTE

verifypn-bounds -n -r 1 -x 13 model.pnml ReachabilityBounds.xml
Angiogenesis-PT-50-ReachabilityBounds-12: place-bound EF ( true and ("Akt" < 0 ) )

FORMULA Angiogenesis-PT-50-ReachabilityBounds-12 CANNOT_COMPUTE

verifypn-bounds -n -r 1 -x 14 model.pnml ReachabilityBounds.xml
Angiogenesis-PT-50-ReachabilityBounds-13: place-bound EF ( true and ("KdStarGStarP3kStarP3" < 0 ) )

FORMULA Angiogenesis-PT-50-ReachabilityBounds-13 CANNOT_COMPUTE

verifypn-bounds -n -r 1 -x 15 model.pnml ReachabilityBounds.xml
Angiogenesis-PT-50-ReachabilityBounds-14: place-bound EF ( true and ("PtP2" < 0 ) and ("KdStarGStar" < 0 ) and ("GStarP3kP3" < 0 ) )

FORMULA Angiogenesis-PT-50-ReachabilityBounds-14
BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_Angiogenesis-PT-50"
export BK_EXAMINATION="ReachabilityBounds"
export BK_TOOL="classicSEQ"
export BK_RESULT_DIR="/users/gast00/fkordon/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_Angiogenesis-PT-50.tgz
mv S_Angiogenesis-PT-50 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2265"
echo " Executing tool classicSEQ"
echo " Input is S_Angiogenesis-PT-50, examination is ReachabilityBounds"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r114st-ebro-143297399300099"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityBounds" = "ReachabilityComputeBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityBounds" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityBounds.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityBounds.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityBounds.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityBounds.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;