Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
...............
=====================================================================
Generated by BenchKit 2-2265
Executing tool classicSEQ
Input is S_Angiogenesis-PT-05, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r114st-ebro-143297399200038
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-0
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-1
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-10
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-11
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-12
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-13
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-14
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-15
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-2
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-3
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-4
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-5
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-6
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-7
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-8
FORMULA_NAME Angiogenesis-PT-05-ReachabilityFireability-9

=== Now, execution of the tool begins

BK_START 1433086158270

---> classicSEQ --- TAPAAL Classic Sequential

**********************************************
TAPAAL classicSEQ verifying ReachabilityFireability
**********************************************

verifypn -n -r 1 -x 1 model.pnml ReachabilityFireability.xml
Angiogenesis-PT-05-ReachabilityFireability-0: EF ( (true and "GStarP3" >= 1 and "KdStar" >= 1) )

FORMULA Angiogenesis-PT-05-ReachabilityFireability-0 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


verifypn -n -r 1 -x 2 model.pnml ReachabilityFireability.xml
Angiogenesis-PT-05-ReachabilityFireability-1: EF ( (not((((true and "KdStarGStarP3" >= 1 and "Pg" >= 1) and (true and "KdStarGStarP3kP3" >= 1)) and not((true and "KdStarGStarPgStar" >= 1 and "Pip2" >= 1)))) and (true and "KdStarGStarP3kStarP3P2" >= 1)) )

FORMULA Angiogenesis-PT-05-ReachabilityFireability-1 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


verifypn -n -r 1 -x 3 model.pnml ReachabilityFireability.xml
Angiogenesis-PT-05-ReachabilityFireability-2: EF ( ((((true and "KdStarGStarP3" >= 1) and (true and "KdStarG" >= 1)) and (((true and "KdStarPgStar" >= 1 and "Pip2" >= 1) and (true and "KdStarGStarPgP3" >= 1)) or (true and "KdStarGStarP3kStarP2" >= 1))) or (true and "KdStarGStarPgStarP3" >= 1 and "Pip2" >= 1)) )

FORMULA Angiogenesis-PT-05-ReachabilityFireability-2 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


verifypn -n -r 1 -x 4 model.pnml ReachabilityFireability.xml
Angiogenesis-PT-05-ReachabilityFireability-3: EF ( (((true and "GP3" >= 1) and not(((true and "KdStarGStarPgStarP3P2" >= 1) or (true and "KdStarGStarP3k" >= 1)))) and not((((true and "KdStarGStarP3" >= 1) and (true and "DAGE" >= 1)) and (true and "GP3" >= 1 and "KdStar" >= 1)))) )

FORMULA Angiogenesis-PT-05-ReachabilityFireability-3 CANNOT_COMPUTE

verifypn -n -r 1 -x 5 model.pnml ReachabilityFireability.xml
Angiogenesis-PT-05-ReachabilityFireability-4: EF ( (((not((true and "GStarPgP3" >= 1)) and not((true and "KdStarGStarPg" >= 1))) and (((true and "KdStarGStarP3" >= 1) and (true and "KdStarGStarPg" >= 1)) and ((true and "GP3" >= 1) or (true and "KdStarGStarP3kStarP3P2" >= 1)))) or ((true and "KdStarGStarP3kStarP2" >= 1) and (true and "KdStarGStarPgP3" >= 1))) )

FORMULA Angiogenesis-PT-05-ReachabilityFireability-4 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


verifypn -n -r 1 -x 6 model.pnml ReachabilityFireability.xml
Angiogenesis-PT-05-ReachabilityFireability-5: EF ( (((not((true and "DAGE" >= 1)) and (true and "GStarPgP3" >= 1)) and (true and "KdStarPgStarP2" >= 1)) and not(not((true and "PtP3" >= 1)))) )

FORMULA Angiogenesis-PT-05-ReachabilityFireability-5 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


verifypn -n -r 1 -x 7 model.pnml ReachabilityFireability.xml
Angiogenesis-PT-05-ReachabilityFireability-6: EF ( ((true and "GStarP3" >= 1 and "P3k" >= 1) and ((true and "Gab1" >= 1 and "KdStar" >= 1) or not(((true and "KdStarGP3" >= 1) or (true and "KdStarPgStar" >= 1 and "Pip2" >= 1))))) )

FORMULA Angiogenesis-PT-05-ReachabilityFireability-6 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


verifypn -n -r 1 -x 8 model.pnml ReachabilityFireability.xml
Angiogenesis-PT-05-ReachabilityFireability-7: EF ( (true and "GStarP3" >= 1 and "KdStar" >= 1) )

FORMULA Angiogenesis-PT-05-ReachabilityFireability-7 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


verifypn -n -r 1 -x 9 model.pnml ReachabilityFireability.xml
Angiogenesis-PT-05-ReachabilityFireability-8: not EF not ( not((not((true and "KdStarGStarPgP3" >= 1)) and (((true and "KdStarPgStarP2" >= 1) and (true and "AktP3" >= 1)) and (true and "KdStarGStarPgP3" >= 1)))) )

FORMULA Angiogenesis-PT-05-ReachabilityFireability-8 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


verifypn -n -r 1 -x 10 model.pnml ReachabilityFireability.xml
Angiogenesis-PT-05-ReachabilityFireability-9: EF ( (not(not(((true and "PtP3" >= 1) and (true and "PtP3P2" >= 1)))) and ((((true and "KdStarGP3" >= 1) and (true and "DAG" >= 1 and "Enz" >= 1)) or (true and "KdStarGStarPgStarP2" >= 1)) and not(((true and "KdStarGStarPgStarP2" >= 1) and (true and "KdStarPgStar" >= 1 and "Pip2" >= 1))))) )

FORMULA Angiogenesis-PT-05-ReachabilityFireability-9 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


verifypn -n -r 1 -x 11 model.pnml ReachabilityFireability.xml
Angiogenesis-PT-05-ReachabilityFireability-10: EF ( (not(((true and "PtP2" >= 1) and ((true and "KdStarGStarPg" >= 1) or (true and "KdStarPg" >= 1)))) and ((((true and "KdStarGStarPgP3" >= 1) and (true and "KdStarGStarP3k" >= 1)) and (true and "KdStarPgStarP2" >= 1)) and (((true and "GStarPgP3" >= 1) and (true and "KdStarPg" >= 1)) or not((true and "KdStarGStarP3kStarP2" >= 1))))) )

FORMULA Angiogenesis-PT-05-ReachabilityFireability-10 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


verifypn -n -r 1 -x 12 model.pnml ReachabilityFireability.xml
Angiogenesis-PT-05-ReachabilityFireability-11: EF ( ((not(not((true and "KdStarGStarPgStarP3P2" >= 1))) and (((true and "KdStarGStarPgStarP3" >= 1 and "Pip2" >= 1) and (true and "KdStarGStarP3kP3" >= 1)) or not((true and "PtP3P2" >= 1)))) and (true and "KdStarGStarPg" >= 1)) )

FORMULA Angiogenesis-PT-05-ReachabilityFireability-11 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


verifypn -n -r 1 -x 13 model.pnml ReachabilityFireability.xml
Angiogenesis-PT-05-ReachabilityFireability-12: not EF not ( not((not(not((true and "KdStarPgStar" >= 1 and "Pip2" >= 1))) and (not((true and "GStarPgP3" >= 1)) and ((true and "KdStarGStarP3" >= 1 and "P3k" >= 1) and (true and "KdStarGStarP3k" >= 1))))) )

FORMULA Angiogenesis-PT-05-ReachabilityFireability-12 FALSE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.


verifypn -n -r 1 -x 14 model.pnml ReachabilityFireability.xml
Angiogenesis-PT-05-ReachabilityFireability-13: EF ( (true and "KdStarGStarP3" >= 1 and "P3k" >= 1) )

FORMULA Angiogenesis-PT-05-ReachabilityFireability-13 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


verifypn -n -r 1 -x 15 model.pnml ReachabilityFireability.xml
Angiogenesis-PT-05-ReachabilityFireability-14: EF ( (true and "GStarP3kP3" >= 1) )

FORMULA Angiogenesis-PT-05-ReachabilityFireability-14 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


verifypn -n -r 1 -x 16 model.pnml ReachabilityFireability.xml
Angiogenesis-PT-05-ReachabilityFireability-15: EF ( (((true and "GStarPgP3" >= 1) or (true and "KdStarGStarP3kStarP3P2" >= 1)) or ((true and "GStarPgP3" >= 1 and "KdStar" >= 1) or (((true and "KdStarGStarP3k" >= 1) and (true and "KdStarPgStarP2" >= 1)) and (true and "KdStarGP3" >= 1)))) )

FORMULA Angiogenesis-PT-05-ReachabilityFireability-15 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


BK_STOP 1433086477316

--------------------
content from stderr:

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_Angiogenesis-PT-05"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="classicSEQ"
export BK_RESULT_DIR="/users/gast00/fkordon/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_Angiogenesis-PT-05.tgz
mv S_Angiogenesis-PT-05 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2265"
echo " Executing tool classicSEQ"
echo " Input is S_Angiogenesis-PT-05, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r114st-ebro-143297399200038"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "ReachabilityComputeBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;