Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
............
=====================================================================
Generated by BenchKit 2-2265
Executing tool marcie
Input is Angiogenesis-PT-05, examination is CTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r008kn-ebro-143214238800028
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-0
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-1
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-10
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-11
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-12
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-13
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-14
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-15
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-2
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-3
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-4
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-5
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-6
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-7
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-8
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-9

=== Now, execution of the tool begins

BK_START 1432328107408

Model: Angiogenesis-PT-05
reachability algorithm:
Saturation-based algorithm
variable ordering algorithm:
Calculated like in [Noa99]
--memory=6 --suppress --rs-algorithm=3 --place-order=5

Marcie rev. 1429:1432M (built: crohr on 2014-10-22)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=CTLCardinality.xml --memory=6 --suppress --rs-algorithm=3 --place-order=5

parse successfull
net created successfully

(NrP: 39 NrTr: 64 NrArc: 185)

net check time: 0m0sec

parse formulas successfull
formulas created successfully
place and transition orderings generation:0m0sec

init dd package: 0m5sec


RS generation: 0m0sec


-> reachability set: #nodes 5306 (5.3e+03) #states 42,734,935 (7)



starting MCC model checker
--------------------------

checking: E [KdStarGStarP3kStarP3P2<=KdStarG U AX [3<=DAGE]]
normalized: E [KdStarGStarP3kStarP3P2<=KdStarG U ~ [EX [~ [3<=DAGE]]]]

abstracting: (3<=DAGE) states: 719,420 (5)
.abstracting: (KdStarGStarP3kStarP3P2<=KdStarG) states: 41,869,337 (7)
-> the formula is TRUE

FORMULA Angiogenesis-PT-05-CTLCardinality-0 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 1m51sec

checking: [[E [DAGE<=DAGE U 1<=GStarPgP3] | ~ [AG [AktStar<=KdStarGStarP3kP3]]] & Pip3<=PtP2]
normalized: [Pip3<=PtP2 & [E [true U ~ [AktStar<=KdStarGStarP3kP3]] | E [DAGE<=DAGE U 1<=GStarPgP3]]]

abstracting: (1<=GStarPgP3) states: 7,981,909 (6)
abstracting: (DAGE<=DAGE) states: 42,734,935 (7)
abstracting: (AktStar<=KdStarGStarP3kP3) states: 8,455,524 (6)
abstracting: (Pip3<=PtP2) states: 32,137,941 (7)
-> the formula is TRUE

FORMULA Angiogenesis-PT-05-CTLCardinality-1 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m2sec

checking: [E [[2<=Pip2 & KdStarGStarP3kP3<=KdStarGP3] U [1<=KdStarGStarP3kStarP3P2 & 1<=Pip3]] | AG [[[KdStarGStarPgP3<=Pg & 1<=Enz] & 1<=AktStar]]]
normalized: [~ [E [true U ~ [[1<=AktStar & [KdStarGStarPgP3<=Pg & 1<=Enz]]]]] | E [[2<=Pip2 & KdStarGStarP3kP3<=KdStarGP3] U [1<=KdStarGStarP3kStarP3P2 & 1<=Pip3]]]

abstracting: (1<=Pip3) states: 13,507,981 (7)
abstracting: (1<=KdStarGStarP3kStarP3P2) states: 1,177,946 (6)
abstracting: (KdStarGStarP3kP3<=KdStarGP3) states: 38,793,091 (7)
abstracting: (2<=Pip2) states: 3,537,642 (6)
abstracting: (1<=Enz) states: 42,727,493 (7)
abstracting: (KdStarGStarPgP3<=Pg) states: 42,197,431 (7)
abstracting: (1<=AktStar) states: 35,086,556 (7)
-> the formula is TRUE

FORMULA Angiogenesis-PT-05-CTLCardinality-2 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 1m36sec

checking: [~ [E [2<=P3k U 1<=KdStarGStarPgStarP3]] & [[~ [[KdStarGStarP3k<=KdStarGStar | 1<=KdStarGStarP3]] | [[2<=GStarPgP3 | KdStarGStar<=KdStarGP3] | ~ [KdStarG<=GStarPgP3]]] & ~ [EX [Pip2<=KdStarGStarP3kP3]]]]
normalized: [[[[[2<=GStarPgP3 | KdStarGStar<=KdStarGP3] | ~ [KdStarG<=GStarPgP3]] | ~ [[KdStarGStarP3k<=KdStarGStar | 1<=KdStarGStarP3]]] & ~ [EX [Pip2<=KdStarGStarP3kP3]]] & ~ [E [2<=P3k U 1<=KdStarGStarPgStarP3]]]

abstracting: (1<=KdStarGStarPgStarP3) states: 4,166,196 (6)
abstracting: (2<=P3k) states: 41,318,063 (7)
abstracting: (Pip2<=KdStarGStarP3kP3) states: 30,158,300 (7)
.abstracting: (1<=KdStarGStarP3) states: 4,240,836 (6)
abstracting: (KdStarGStarP3k<=KdStarGStar) states: 32,554,361 (7)
abstracting: (KdStarG<=GStarPgP3) states: 32,167,633 (7)
abstracting: (KdStarGStar<=KdStarGP3) states: 30,915,027 (7)
abstracting: (2<=GStarPgP3) states: 863,228 (5)
-> the formula is FALSE

FORMULA Angiogenesis-PT-05-CTLCardinality-3 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 3m43sec

checking: E [[[PtP3<=Pip2 | P3k<=KdStarPgStarP2] & [1<=P3k & KdStarGStarPgP3<=KdStarGStarP3kStarP3P2]] U AG [AktStar<=KdStarGStarP3kStarP3P2]]
normalized: E [[[PtP3<=Pip2 | P3k<=KdStarPgStarP2] & [1<=P3k & KdStarGStarPgP3<=KdStarGStarP3kStarP3P2]] U ~ [E [true U ~ [AktStar<=KdStarGStarP3kStarP3P2]]]]

abstracting: (AktStar<=KdStarGStarP3kStarP3P2) states: 7,855,115 (6)
abstracting: (KdStarGStarPgP3<=KdStarGStarP3kStarP3P2) states: 38,639,061 (7)
abstracting: (1<=P3k) states: 42,575,177 (7)
abstracting: (P3k<=KdStarPgStarP2) states: 293,771 (5)
abstracting: (PtP3<=Pip2) states: 32,137,941 (7)
-> the formula is TRUE

FORMULA Angiogenesis-PT-05-CTLCardinality-4 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m45sec

checking: AG [~ [[[3<=DAG | 3<=DAG] & ~ [KdStarGStarPgStarP2<=Pten]]]]
normalized: ~ [E [true U [~ [KdStarGStarPgStarP2<=Pten] & [3<=DAG | 3<=DAG]]]]

abstracting: (3<=DAG) states: 719,420 (5)
abstracting: (3<=DAG) states: 719,420 (5)
abstracting: (KdStarGStarPgStarP2<=Pten) states: 42,734,935 (7)
-> the formula is TRUE

FORMULA Angiogenesis-PT-05-CTLCardinality-5 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: ~ [AG [[[PtP2<=P3k | 3<=Pg] & [3<=PtP3 | GStarPgP3<=KdStarPgStar]]]]
normalized: E [true U ~ [[[3<=PtP3 | GStarPgP3<=KdStarPgStar] & [PtP2<=P3k | 3<=Pg]]]]

abstracting: (3<=Pg) states: 20,822,945 (7)
abstracting: (PtP2<=P3k) states: 42,490,520 (7)
abstracting: (GStarPgP3<=KdStarPgStar) states: 38,212,149 (7)
abstracting: (3<=PtP3) states: 718,700 (5)
-> the formula is TRUE

FORMULA Angiogenesis-PT-05-CTLCardinality-6 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m30sec

checking: AG [~ [AF [3<=KdStarGStarP3kStar]]]
normalized: ~ [E [true U ~ [EG [~ [3<=KdStarGStarP3kStar]]]]]

abstracting: (3<=KdStarGStarP3kStar) states: 512,541 (5)
.
EG iterations: 1
-> the formula is FALSE

FORMULA Angiogenesis-PT-05-CTLCardinality-7 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m1sec

checking: ~ [[AX [[3<=Pg & 3<=Pg]] & EF [[3<=AktStar & AktP3<=PtP2]]]]
normalized: ~ [[E [true U [3<=AktStar & AktP3<=PtP2]] & ~ [EX [~ [[3<=Pg & 3<=Pg]]]]]]

abstracting: (3<=Pg) states: 20,822,945 (7)
abstracting: (3<=Pg) states: 20,822,945 (7)
.abstracting: (AktP3<=PtP2) states: 34,117,343 (7)
abstracting: (3<=AktStar) states: 19,817,822 (7)
-> the formula is FALSE

FORMULA Angiogenesis-PT-05-CTLCardinality-8 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m1sec

checking: E [KdStarGStarP3kP3<=Pg U 1<=KdStarGStarPgStarP3P2]
normalized: E [KdStarGStarP3kP3<=Pg U 1<=KdStarGStarPgStarP3P2]

abstracting: (1<=KdStarGStarPgStarP3P2) states: 1,161,840 (6)
abstracting: (KdStarGStarP3kP3<=Pg) states: 42,653,028 (7)
-> the formula is TRUE

FORMULA Angiogenesis-PT-05-CTLCardinality-9 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m21sec

checking: EF [[AX [3<=KdStarPgStarP2] & KdStarPgStar<=GStarP3kP3]]
normalized: E [true U [KdStarPgStar<=GStarP3kP3 & ~ [EX [~ [3<=KdStarPgStarP2]]]]]

abstracting: (3<=KdStarPgStarP2) states: 19,920 (4)
.abstracting: (KdStarPgStar<=GStarP3kP3) states: 28,249,143 (7)
-> the formula is TRUE

FORMULA Angiogenesis-PT-05-CTLCardinality-10 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m29sec

checking: 1<=PtP3
normalized: 1<=PtP3

abstracting: (1<=PtP3) states: 13,507,981 (7)
-> the formula is FALSE

FORMULA Angiogenesis-PT-05-CTLCardinality-11 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: EX [[AF [AktP3<=KdStarGStar] & [[KdStarGStarPgStarP3<=KdStarGStarPg & 3<=KdStarGStarP3kStarP3P2] & [KdStarGStarPgStarP3P2<=KdStarPgStar & PtP2<=Pip2]]]]
normalized: EX [[[[KdStarGStarPgStarP3P2<=KdStarPgStar & PtP2<=Pip2] & [KdStarGStarPgStarP3<=KdStarGStarPg & 3<=KdStarGStarP3kStarP3P2]] & ~ [EG [~ [AktP3<=KdStarGStar]]]]]

abstracting: (AktP3<=KdStarGStar) states: 34,503,405 (7)
...
EG iterations: 3
abstracting: (3<=KdStarGStarP3kStarP3P2) states: 0
abstracting: (KdStarGStarPgStarP3<=KdStarGStarPg) states: 39,540,083 (7)
abstracting: (PtP2<=Pip2) states: 32,136,080 (7)
abstracting: (KdStarGStarPgStarP3P2<=KdStarPgStar) states: 41,984,261 (7)
.-> the formula is FALSE

FORMULA Angiogenesis-PT-05-CTLCardinality-12 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m35sec

checking: 3<=KdStarG
normalized: 3<=KdStarG

abstracting: (3<=KdStarG) states: 452,534 (5)
-> the formula is FALSE

FORMULA Angiogenesis-PT-05-CTLCardinality-13 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: [[AG [2<=GStarPgP3] & [KdStarGStarP3k<=KdStarGStarPgP3 | AG [KdStarGStarP3kStar<=KdStarGP3]]] & AG [[2<=GStarP3kP3 | [KdStarGStarP3kStarP3<=Pip2 | GP3<=GStarP3]]]]
normalized: [~ [E [true U ~ [[2<=GStarP3kP3 | [KdStarGStarP3kStarP3<=Pip2 | GP3<=GStarP3]]]]] & [[KdStarGStarP3k<=KdStarGStarPgP3 | ~ [E [true U ~ [KdStarGStarP3kStar<=KdStarGP3]]]] & ~ [E [true U ~ [2<=GStarPgP3]]]]]

abstracting: (2<=GStarPgP3) states: 863,228 (5)
abstracting: (KdStarGStarP3kStar<=KdStarGP3) states: 30,915,027 (7)
abstracting: (KdStarGStarP3k<=KdStarGStarPgP3) states: 30,911,952 (7)
abstracting: (GP3<=GStarP3) states: 35,418,847 (7)
abstracting: (KdStarGStarP3kStarP3<=Pip2) states: 39,610,297 (7)
abstracting: (2<=GStarP3kP3) states: 1,221,896 (6)
-> the formula is FALSE

FORMULA Angiogenesis-PT-05-CTLCardinality-14 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 3m10sec

checking: A [~ [~ [Pip3<=KdStarGStarP3kStarP3P2]] U [2<=KdStarPgStar | ~ [DAG<=P3k]]]
normalized: [~ [E [~ [Pip3<=KdStarGStarP3kStarP3P2] U [~ [[2<=KdStarPgStar | ~ [DAG<=P3k]]] & ~ [Pip3<=KdStarGStarP3kStarP3P2]]]] & ~ [EG [~ [[2<=KdStarPgStar | ~ [DAG<=P3k]]]]]]

abstracting: (DAG<=P3k) states: 42,490,520 (7)
abstracting: (2<=KdStarPgStar) states: 5,349,501 (6)
.
EG iterations: 1
abstracting: (Pip3<=KdStarGStarP3kStarP3P2) states: 29,443,410 (7)
abstracting: (DAG<=P3k) states: 42,490,520 (7)
abstracting: (2<=KdStarPgStar) states: 5,349,501 (6)
abstracting: (Pip3<=KdStarGStarP3kStarP3P2) states: 29,443,410 (7)
-> the formula is FALSE

FORMULA Angiogenesis-PT-05-CTLCardinality-15 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m7sec


Total processing time: 13m29sec


BK_STOP 1432328916564

--------------------
content from stderr:

check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m0sec

2693 3141 4748 5865 5965
iterations count:5828 (91), effective:482 (7)

initing FirstDep: 0m0sec

5354 9799 10611 8826
iterations count:4447 (69), effective:290 (4)
5932
iterations count:1072 (16), effective:58 (0)

iterations count:942 (14), effective:50 (0)
6484 7915
iterations count:2318 (36), effective:167 (2)
8245 7236 6698
iterations count:3115 (48), effective:212 (3)
5436
iterations count:1010 (15), effective:57 (0)
6705
iterations count:1208 (18), effective:75 (1)
5865 7037 7801
iterations count:3449 (53), effective:247 (3)
14009 11815 7131
iterations count:3055 (47), effective:222 (3)
11392
iterations count:1822 (28), effective:113 (1)
6791
iterations count:1223 (19), effective:77 (1)
7487
iterations count:1482 (23), effective:95 (1)
3361
iterations count:1474 (23), effective:87 (1)

iterations count:91 (1), effective:5 (0)

iterations count:778 (12), effective:44 (0)
7663 7179
iterations count:2491 (38), effective:180 (2)

iterations count:906 (14), effective:50 (0)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-05"
export BK_EXAMINATION="CTLCardinality"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/users/gast00/fkordon/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-05.tgz
mv Angiogenesis-PT-05 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2265"
echo " Executing tool marcie"
echo " Input is Angiogenesis-PT-05, examination is CTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r008kn-ebro-143214238800028"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLCardinality" = "ReachabilityComputeBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;