Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.................
=====================================================================
Generated by BenchKit 2-2265
Executing tool marcie
Input is Angiogenesis-PT-01, examination is ReachabilityCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r008kn-ebro-143214238800022
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-0
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-1
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-10
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-11
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-12
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-13
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-14
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-15
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-2
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-3
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-4
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-5
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-6
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-7
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-8
FORMULA_NAME Angiogenesis-PT-01-ReachabilityCardinality-9

=== Now, execution of the tool begins

BK_START 1432328103148

Model: Angiogenesis-PT-01
reachability algorithm:
Saturation-based algorithm
variable ordering algorithm:
Calculated like in [Noa99]
--memory=6 --suppress --rs-algorithm=3 --place-order=5

Marcie rev. 1429:1432M (built: crohr on 2014-10-22)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=ReachabilityCardinality.xml --memory=6 --suppress --rs-algorithm=3 --place-order=5

parse successfull
net created successfully

(NrP: 39 NrTr: 64 NrArc: 185)

net check time: 0m0sec

parse formulas successfull
formulas created successfully
place and transition orderings generation:0m0sec

init dd package: 0m5sec


RS generation: 0m0sec


-> reachability set: #nodes 205 (2.0e+02) #states 110



starting MCC model checker
--------------------------

checking: AG [1<=KdStarGStarPg]
normalized: ~ [E [true U ~ [1<=KdStarGStarPg]]]

abstracting: (1<=KdStarGStarPg) states: 13
-> the formula is FALSE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-0 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: EF [[[[KdStarPgStarP2<=KdStarGStarPg | AktStar<=KdStarGStarP3k] | ~ [2<=KdStarGStarPgStarP3P2]] | [[KdStarGStarP3kP3<=KdStarGStarP3kStar | KdStarGP3<=Pg] & 2<=P3k]]]
normalized: E [true U [[2<=P3k & [KdStarGStarP3kP3<=KdStarGStarP3kStar | KdStarGP3<=Pg]] | [~ [2<=KdStarGStarPgStarP3P2] | [KdStarPgStarP2<=KdStarGStarPg | AktStar<=KdStarGStarP3k]]]]

abstracting: (AktStar<=KdStarGStarP3k) states: 72
abstracting: (KdStarPgStarP2<=KdStarGStarPg) states: 109
abstracting: (2<=KdStarGStarPgStarP3P2) states: 0
abstracting: (KdStarGP3<=Pg) states: 110
abstracting: (KdStarGStarP3kP3<=KdStarGStarP3kStar) states: 108
abstracting: (2<=P3k) states: 0
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-1 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: EF [~ [2<=GP3]]
normalized: E [true U ~ [2<=GP3]]

abstracting: (2<=GP3) states: 0
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-2 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: AG [[[[PtP3<=PtP2 & 2<=KdStarGStar] | [DAGE<=Pip3 | 3<=DAGE]] | PtP3<=Gab1]]
normalized: ~ [E [true U ~ [[PtP3<=Gab1 | [[DAGE<=Pip3 | 3<=DAGE] | [PtP3<=PtP2 & 2<=KdStarGStar]]]]]]

abstracting: (2<=KdStarGStar) states: 0
abstracting: (PtP3<=PtP2) states: 100
abstracting: (3<=DAGE) states: 0
abstracting: (DAGE<=Pip3) states: 96
abstracting: (PtP3<=Gab1) states: 100
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-3 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: AG [3<=AktP3]
normalized: ~ [E [true U ~ [3<=AktP3]]]

abstracting: (3<=AktP3) states: 0
-> the formula is FALSE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-4 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: EF [[[[KdStarGStarPg<=GStarP3kP3 | KdStarGStarPgStarP3<=PtP3] | 1<=KdStarGStarPgStar] | [[KdStarGStarPg<=AktP3 & 1<=KdStarGStarPgP3] & 1<=KdStarGStarPgStarP3]]]
normalized: E [true U [[1<=KdStarGStarPgStarP3 & [KdStarGStarPg<=AktP3 & 1<=KdStarGStarPgP3]] | [1<=KdStarGStarPgStar | [KdStarGStarPg<=GStarP3kP3 | KdStarGStarPgStarP3<=PtP3]]]]

abstracting: (KdStarGStarPgStarP3<=PtP3) states: 108
abstracting: (KdStarGStarPg<=GStarP3kP3) states: 97
abstracting: (1<=KdStarGStarPgStar) states: 13
abstracting: (1<=KdStarGStarPgP3) states: 2
abstracting: (KdStarGStarPg<=AktP3) states: 98
abstracting: (1<=KdStarGStarPgStarP3) states: 2
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-5 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: AG [~ [~ [[3<=KdStarGStarPgP3 | 3<=KdStarGStarP3kP3]]]]
normalized: ~ [E [true U ~ [[3<=KdStarGStarPgP3 | 3<=KdStarGStarP3kP3]]]]

abstracting: (3<=KdStarGStarP3kP3) states: 0
abstracting: (3<=KdStarGStarPgP3) states: 0
-> the formula is FALSE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-6 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: AG [[~ [1<=GP3] & [Pip2<=GStarP3kP3 | [KdStarGStarP3<=KdStarGP3 & 2<=Enz]]]]
normalized: ~ [E [true U ~ [[~ [1<=GP3] & [Pip2<=GStarP3kP3 | [KdStarGStarP3<=KdStarGP3 & 2<=Enz]]]]]]

abstracting: (2<=Enz) states: 0
abstracting: (KdStarGStarP3<=KdStarGP3) states: 108
abstracting: (Pip2<=GStarP3kP3) states: 96
abstracting: (1<=GP3) states: 0
-> the formula is FALSE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-7 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: EF [~ [[[2<=GP3 | 1<=KdStarGStarPgStar] & ~ [3<=Pip3]]]]
normalized: E [true U ~ [[[2<=GP3 | 1<=KdStarGStarPgStar] & ~ [3<=Pip3]]]]

abstracting: (3<=Pip3) states: 0
abstracting: (1<=KdStarGStarPgStar) states: 13
abstracting: (2<=GP3) states: 0
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-8 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: EF [[~ [[Pip2<=KdStarGStarPgStarP2 | 3<=KdStarGStarP3kP3]] & [[KdStarGStarPg<=AktP3 | KdStar<=KdStarGStarP3kStar] | [KdStarGStarPgStarP3P2<=AktP3 & Gab1<=GStarP3kP3]]]]
normalized: E [true U [~ [[Pip2<=KdStarGStarPgStarP2 | 3<=KdStarGStarP3kP3]] & [[KdStarGStarPgStarP3P2<=AktP3 & Gab1<=GStarP3kP3] | [KdStarGStarPg<=AktP3 | KdStar<=KdStarGStarP3kStar]]]]

abstracting: (KdStar<=KdStarGStarP3kStar) states: 100
abstracting: (KdStarGStarPg<=AktP3) states: 98
abstracting: (Gab1<=GStarP3kP3) states: 97
abstracting: (KdStarGStarPgStarP3P2<=AktP3) states: 110
abstracting: (3<=KdStarGStarP3kP3) states: 0
abstracting: (Pip2<=KdStarGStarPgStarP2) states: 96
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-9 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: AG [[[~ [1<=P3k] & 3<=KdStarGStarP3kStarP3] | GStarP3<=KdStarGStarPgP3]]
normalized: ~ [E [true U ~ [[GStarP3<=KdStarGStarPgP3 | [3<=KdStarGStarP3kStarP3 & ~ [1<=P3k]]]]]]

abstracting: (1<=P3k) states: 72
abstracting: (3<=KdStarGStarP3kStarP3) states: 0
abstracting: (GStarP3<=KdStarGStarPgP3) states: 104
-> the formula is FALSE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-10 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: EF [~ [[[KdStarGStarP3k<=KdStarGStarPg | 3<=P3k] & ~ [Pten<=KdStarG]]]]
normalized: E [true U ~ [[~ [Pten<=KdStarG] & [KdStarGStarP3k<=KdStarGStarPg | 3<=P3k]]]]

abstracting: (3<=P3k) states: 0
abstracting: (KdStarGStarP3k<=KdStarGStarPg) states: 97
abstracting: (Pten<=KdStarG) states: 27
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-11 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: AG [[~ [~ [2<=DAGE]] | [1<=GStarPgP3 & [KdStarGStarPgP3<=KdStarGStarP3kStarP3P2 | 3<=KdStarG]]]]
normalized: ~ [E [true U ~ [[2<=DAGE | [1<=GStarPgP3 & [KdStarGStarPgP3<=KdStarGStarP3kStarP3P2 | 3<=KdStarG]]]]]]

abstracting: (3<=KdStarG) states: 0
abstracting: (KdStarGStarPgP3<=KdStarGStarP3kStarP3P2) states: 108
abstracting: (1<=GStarPgP3) states: 2
abstracting: (2<=DAGE) states: 0
-> the formula is FALSE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-12 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: EF [[~ [KdStarGStarP3kP3<=GStarP3] & [KdStarGStarPgStarP3<=KdStarPgStar & ~ [1<=Pip3]]]]
normalized: E [true U [~ [KdStarGStarP3kP3<=GStarP3] & [KdStarGStarPgStarP3<=KdStarPgStar & ~ [1<=Pip3]]]]

abstracting: (1<=Pip3) states: 10
abstracting: (KdStarGStarPgStarP3<=KdStarPgStar) states: 108
abstracting: (KdStarGStarP3kP3<=GStarP3) states: 108
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-13 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: AG [[[[KdStarGStarPgStarP3P2<=KdStarGStarPgStar | 2<=Pip3] & [P3k<=Pip2 | 1<=AktP3]] | [AktP3<=PtP3P2 | [KdStarGP3<=KdStarGStarPgStarP3 & 1<=GStarP3]]]]
normalized: ~ [E [true U ~ [[[[P3k<=Pip2 | 1<=AktP3] & [KdStarGStarPgStarP3P2<=KdStarGStarPgStar | 2<=Pip3]] | [AktP3<=PtP3P2 | [KdStarGP3<=KdStarGStarPgStarP3 & 1<=GStarP3]]]]]]

abstracting: (1<=GStarP3) states: 6
abstracting: (KdStarGP3<=KdStarGStarPgStarP3) states: 110
abstracting: (AktP3<=PtP3P2) states: 105
abstracting: (2<=Pip3) states: 0
abstracting: (KdStarGStarPgStarP3P2<=KdStarGStarPgStar) states: 110
abstracting: (1<=AktP3) states: 5
abstracting: (P3k<=Pip2) states: 48
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-14 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: EF [1<=DAG]
normalized: E [true U 1<=DAG]

abstracting: (1<=DAG) states: 14
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityCardinality-15 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec


Total processing time: 0m8sec


BK_STOP 1432328111686

--------------------
content from stderr:

check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m0sec


iterations count:820 (12), effective:56 (0)

initing FirstDep: 0m0sec


iterations count:78 (1), effective:1 (0)

iterations count:64 (1), effective:0 (0)

iterations count:64 (1), effective:0 (0)

iterations count:64 (1), effective:0 (0)

iterations count:64 (1), effective:0 (0)

iterations count:64 (1), effective:0 (0)

iterations count:311 (4), effective:16 (0)

iterations count:175 (2), effective:7 (0)

iterations count:311 (4), effective:16 (0)

iterations count:535 (8), effective:30 (0)

iterations count:387 (6), effective:21 (0)

iterations count:72 (1), effective:1 (0)

iterations count:540 (8), effective:31 (0)

iterations count:520 (8), effective:28 (0)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-01"
export BK_EXAMINATION="ReachabilityCardinality"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/users/gast00/fkordon/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-01.tgz
mv Angiogenesis-PT-01 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2265"
echo " Executing tool marcie"
echo " Input is Angiogenesis-PT-01, examination is ReachabilityCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r008kn-ebro-143214238800022"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityCardinality" = "ReachabilityComputeBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;