Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.................
=====================================================================
Generated by BenchKit 2-2265
Executing tool marcie
Input is Angiogenesis-PT-01, examination is ReachabilityBounds
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r008kn-ebro-143214238800021
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-01-ReachabilityBounds-0
FORMULA_NAME Angiogenesis-PT-01-ReachabilityBounds-1
FORMULA_NAME Angiogenesis-PT-01-ReachabilityBounds-10
FORMULA_NAME Angiogenesis-PT-01-ReachabilityBounds-11
FORMULA_NAME Angiogenesis-PT-01-ReachabilityBounds-12
FORMULA_NAME Angiogenesis-PT-01-ReachabilityBounds-13
FORMULA_NAME Angiogenesis-PT-01-ReachabilityBounds-14
FORMULA_NAME Angiogenesis-PT-01-ReachabilityBounds-15
FORMULA_NAME Angiogenesis-PT-01-ReachabilityBounds-2
FORMULA_NAME Angiogenesis-PT-01-ReachabilityBounds-3
FORMULA_NAME Angiogenesis-PT-01-ReachabilityBounds-4
FORMULA_NAME Angiogenesis-PT-01-ReachabilityBounds-5
FORMULA_NAME Angiogenesis-PT-01-ReachabilityBounds-6
FORMULA_NAME Angiogenesis-PT-01-ReachabilityBounds-7
FORMULA_NAME Angiogenesis-PT-01-ReachabilityBounds-8
FORMULA_NAME Angiogenesis-PT-01-ReachabilityBounds-9

=== Now, execution of the tool begins

BK_START 1432328102010

Model: Angiogenesis-PT-01
reachability algorithm:
Saturation-based algorithm
variable ordering algorithm:
Calculated like in [Noa99]
--memory=6 --suppress --rs-algorithm=3 --place-order=5

Marcie rev. 1429:1432M (built: crohr on 2014-10-22)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=ReachabilityBounds.xml --memory=6 --suppress --rs-algorithm=3 --place-order=5

parse successfull
net created successfully

(NrP: 39 NrTr: 64 NrArc: 185)

net check time: 0m0sec

parse formulas successfull
formulas created successfully
place and transition orderings generation:0m0sec

init dd package: 0m5sec


RS generation: 0m0sec


-> reachability set: #nodes 205 (2.0e+02) #states 110



starting MCC model checker
--------------------------

checking: [[maxVal(Pten)<=3 & maxVal(PtP3P2)<=1] & maxVal(KdStarG)<=2]
normalized: [maxVal(KdStarG)<=2 & [maxVal(Pten)<=3 & maxVal(PtP3P2)<=1]]

abstracting: (0<=1) states: 110
abstracting: (1<=3) states: 110
abstracting: (1<=2) states: 110
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityBounds-0 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: [maxVal(KdStarGStarP3kP3)<=1 & maxVal(AktStar)<=2]
normalized: [maxVal(KdStarGStarP3kP3)<=1 & maxVal(AktStar)<=2]

abstracting: (1<=2) states: 110
abstracting: (1<=1) states: 110
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityBounds-1 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: maxVal(KdStarPgStar)<=2
normalized: maxVal(KdStarPgStar)<=2

abstracting: (1<=2) states: 110
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityBounds-2 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: [[[maxVal(Pg)<=1 & maxVal(Akt)<=2] & maxVal(Enz)<=2] & [maxVal(KdStarGStarPgStarP2)<=2 & [[[maxVal(PtP2)<=3 & [maxVal(KdStarPgStarP2)<=1 & maxVal(GStarP3)<=3]] & maxVal(Enz)<=2] & [maxVal(KdStarGStarPgStarP3P2)<=3 & [[maxVal(PtP2)<=2 & maxVal(Akt)<=2] & maxVal(KdStarGP3)<=1]]]]]
normalized: [[maxVal(KdStarGStarPgStarP2)<=2 & [[maxVal(KdStarGStarPgStarP3P2)<=3 & [maxVal(KdStarGP3)<=1 & [maxVal(PtP2)<=2 & maxVal(Akt)<=2]]] & [maxVal(Enz)<=2 & [maxVal(PtP2)<=3 & [maxVal(KdStarPgStarP2)<=1 & maxVal(GStarP3)<=3]]]]] & [maxVal(Enz)<=2 & [maxVal(Pg)<=1 & maxVal(Akt)<=2]]]

abstracting: (1<=2) states: 110
abstracting: (1<=1) states: 110
abstracting: (1<=2) states: 110
abstracting: (1<=3) states: 110
abstracting: (1<=1) states: 110
abstracting: (1<=3) states: 110
abstracting: (1<=2) states: 110
abstracting: (1<=2) states: 110
abstracting: (1<=2) states: 110
abstracting: (0<=1) states: 110
abstracting: (0<=3) states: 110
abstracting: (1<=2) states: 110
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityBounds-3 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: [[[[maxVal(KdStarGStarPgStarP3P2)<=3 & maxVal(Pip3)<=1] & maxVal(Pg)<=3] & maxVal(KdStarGStarP3kStar)<=2] & [maxVal(KdStarGStarPgStarP3)<=3 & maxVal(KdStarGP3)<=2]]
normalized: [[maxVal(KdStarGStarPgStarP3)<=3 & maxVal(KdStarGP3)<=2] & [maxVal(KdStarGStarP3kStar)<=2 & [maxVal(Pg)<=3 & [maxVal(KdStarGStarPgStarP3P2)<=3 & maxVal(Pip3)<=1]]]]

abstracting: (1<=1) states: 110
abstracting: (0<=3) states: 110
abstracting: (1<=3) states: 110
abstracting: (1<=2) states: 110
abstracting: (0<=2) states: 110
abstracting: (1<=3) states: 110
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityBounds-4 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: [maxVal(KdStarGStarP3kP3)<=2 & maxVal(Pg)<=3]
normalized: [maxVal(KdStarGStarP3kP3)<=2 & maxVal(Pg)<=3]

abstracting: (1<=3) states: 110
abstracting: (1<=2) states: 110
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityBounds-5 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: maxVal(KdStarGStarPgStar)<=2
normalized: maxVal(KdStarGStarPgStar)<=2

abstracting: (1<=2) states: 110
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityBounds-6 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: maxVal(P3k)<=2
normalized: maxVal(P3k)<=2

abstracting: (1<=2) states: 110
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityBounds-7 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: [[maxVal(Pg)<=2 & maxVal(PtP2)<=1] & [[maxVal(KdStarGStarP3kStarP3P2)<=1 & maxVal(KdStarGStarP3kStarP3)<=3] & maxVal(GStarPgP3)<=2]]
normalized: [[maxVal(GStarPgP3)<=2 & [maxVal(KdStarGStarP3kStarP3P2)<=1 & maxVal(KdStarGStarP3kStarP3)<=3]] & [maxVal(Pg)<=2 & maxVal(PtP2)<=1]]

abstracting: (1<=1) states: 110
abstracting: (1<=2) states: 110
abstracting: (1<=3) states: 110
abstracting: (0<=1) states: 110
abstracting: (1<=2) states: 110
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityBounds-8 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: [maxVal(PtP3P2)<=2 & maxVal(KdStarGStarPg)<=1]
normalized: [maxVal(PtP3P2)<=2 & maxVal(KdStarGStarPg)<=1]

abstracting: (1<=1) states: 110
abstracting: (0<=2) states: 110
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityBounds-9 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: [maxVal(KdStarGStarP3kStarP2)<=2 & [[maxVal(DAG)<=3 & maxVal(KdStarPg)<=2] & maxVal(PtP3)<=3]]
normalized: [maxVal(KdStarGStarP3kStarP2)<=2 & [maxVal(PtP3)<=3 & [maxVal(DAG)<=3 & maxVal(KdStarPg)<=2]]]

abstracting: (1<=2) states: 110
abstracting: (1<=3) states: 110
abstracting: (1<=3) states: 110
abstracting: (1<=2) states: 110
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityBounds-10 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: [[maxVal(KdStarGStar)<=1 & maxVal(PtP3P2)<=1] & maxVal(Pten)<=3]
normalized: [maxVal(Pten)<=3 & [maxVal(KdStarGStar)<=1 & maxVal(PtP3P2)<=1]]

abstracting: (0<=1) states: 110
abstracting: (1<=1) states: 110
abstracting: (1<=3) states: 110
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityBounds-11 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: [maxVal(KdStarGStarPgStar)<=1 & maxVal(KdStarGStarP3kStar)<=1]
normalized: [maxVal(KdStarGStarPgStar)<=1 & maxVal(KdStarGStarP3kStar)<=1]

abstracting: (1<=1) states: 110
abstracting: (1<=1) states: 110
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityBounds-12 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: [[maxVal(PtP2)<=1 & maxVal(KdStarPgStar)<=2] & [[[maxVal(KdStarGStarP3kP3)<=3 & maxVal(KdStarPgStarP2)<=3] & maxVal(AktP3)<=1] & maxVal(DAG)<=2]]
normalized: [[maxVal(PtP2)<=1 & maxVal(KdStarPgStar)<=2] & [maxVal(DAG)<=2 & [maxVal(AktP3)<=1 & [maxVal(KdStarGStarP3kP3)<=3 & maxVal(KdStarPgStarP2)<=3]]]]

abstracting: (1<=3) states: 110
abstracting: (1<=3) states: 110
abstracting: (1<=1) states: 110
abstracting: (1<=2) states: 110
abstracting: (1<=2) states: 110
abstracting: (1<=1) states: 110
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityBounds-13 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: maxVal(AktP3)<=2
normalized: maxVal(AktP3)<=2

abstracting: (1<=2) states: 110
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityBounds-14 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: [[maxVal(Enz)<=3 & maxVal(AktStar)<=1] & maxVal(KdStarGStarP3kStarP3)<=1]
normalized: [maxVal(KdStarGStarP3kStarP3)<=1 & [maxVal(Enz)<=3 & maxVal(AktStar)<=1]]

abstracting: (1<=1) states: 110
abstracting: (1<=3) states: 110
abstracting: (1<=1) states: 110
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-ReachabilityBounds-15 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec


Total processing time: 0m7sec


BK_STOP 1432328109872

--------------------
content from stderr:

check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m0sec


iterations count:820 (12), effective:56 (0)

initing FirstDep: 0m0sec

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-01"
export BK_EXAMINATION="ReachabilityBounds"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/users/gast00/fkordon/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-01.tgz
mv Angiogenesis-PT-01 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2265"
echo " Executing tool marcie"
echo " Input is Angiogenesis-PT-01, examination is ReachabilityBounds"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r008kn-ebro-143214238800021"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityBounds" = "ReachabilityComputeBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityBounds" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityBounds.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityBounds.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityBounds.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityBounds.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;