Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.............
=====================================================================
Generated by BenchKit 2-2265
Executing tool marcie
Input is Angiogenesis-PT-01, examination is CTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r008kn-ebro-143214238800015
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-0
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-1
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-10
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-11
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-12
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-13
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-14
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-15
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-2
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-3
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-4
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-5
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-6
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-7
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-8
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-9

=== Now, execution of the tool begins

BK_START 1432328091210

Model: Angiogenesis-PT-01
reachability algorithm:
Saturation-based algorithm
variable ordering algorithm:
Calculated like in [Noa99]
--memory=6 --suppress --rs-algorithm=3 --place-order=5

Marcie rev. 1429:1432M (built: crohr on 2014-10-22)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=CTLCardinality.xml --memory=6 --suppress --rs-algorithm=3 --place-order=5

parse successfull
net created successfully

(NrP: 39 NrTr: 64 NrArc: 185)

net check time: 0m0sec

parse formulas successfull
formulas created successfully
place and transition orderings generation:0m0sec

init dd package: 0m5sec


RS generation: 0m0sec


-> reachability set: #nodes 205 (2.0e+02) #states 110



starting MCC model checker
--------------------------

checking: ~ [A [1<=KdStarG U [Gab1<=AktP3 & 1<=Enz]]]
normalized: ~ [[~ [E [~ [1<=KdStarG] U [~ [1<=KdStarG] & ~ [[Gab1<=AktP3 & 1<=Enz]]]]] & ~ [EG [~ [[Gab1<=AktP3 & 1<=Enz]]]]]]

abstracting: (1<=Enz) states: 96
abstracting: (Gab1<=AktP3) states: 97
..
EG iterations: 2
abstracting: (1<=Enz) states: 96
abstracting: (Gab1<=AktP3) states: 97
abstracting: (1<=KdStarG) states: 4
abstracting: (1<=KdStarG) states: 4
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-CTLCardinality-0 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: 1<=GStarP3kP3
normalized: 1<=GStarP3kP3

abstracting: (1<=GStarP3kP3) states: 6
-> the formula is FALSE

FORMULA Angiogenesis-PT-01-CTLCardinality-1 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: EG [~ [~ [[3<=GStarP3 & AktStar<=KdStarGStarPgP3]]]]
normalized: EG [[3<=GStarP3 & AktStar<=KdStarGStarPgP3]]

abstracting: (AktStar<=KdStarGStarPgP3) states: 67
abstracting: (3<=GStarP3) states: 0
.
EG iterations: 1
-> the formula is FALSE

FORMULA Angiogenesis-PT-01-CTLCardinality-2 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: [EG [AX [KdStarGStar<=GStarPgP3]] & [E [PtP3<=KdStarGStarP3kStarP3P2 U AktP3<=KdStarGStarPgStarP3P2] & ~ [KdStarGStarPgStar<=KdStarGP3]]]
normalized: [EG [~ [EX [~ [KdStarGStar<=GStarPgP3]]]] & [E [PtP3<=KdStarGStarP3kStarP3P2 U AktP3<=KdStarGStarPgStarP3P2] & ~ [KdStarGStarPgStar<=KdStarGP3]]]

abstracting: (KdStarGStarPgStar<=KdStarGP3) states: 97
abstracting: (AktP3<=KdStarGStarPgStarP3P2) states: 105
abstracting: (PtP3<=KdStarGStarP3kStarP3P2) states: 100
abstracting: (KdStarGStar<=GStarPgP3) states: 97
..
EG iterations: 1
-> the formula is FALSE

FORMULA Angiogenesis-PT-01-CTLCardinality-3 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: AF [~ [EX [2<=KdStarGStarPg]]]
normalized: ~ [EG [EX [2<=KdStarGStarPg]]]

abstracting: (2<=KdStarGStarPg) states: 0
..
EG iterations: 1
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-CTLCardinality-4 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: [E [2<=GStarP3kP3 U KdStarGStarPgStar<=GP3] & AG [~ [[2<=Pip3 & KdStarPgStarP2<=KdStarGStarP3k]]]]
normalized: [~ [E [true U [2<=Pip3 & KdStarPgStarP2<=KdStarGStarP3k]]] & E [2<=GStarP3kP3 U KdStarGStarPgStar<=GP3]]

abstracting: (KdStarGStarPgStar<=GP3) states: 97
abstracting: (2<=GStarP3kP3) states: 0
abstracting: (KdStarPgStarP2<=KdStarGStarP3k) states: 109
abstracting: (2<=Pip3) states: 0
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-CTLCardinality-5 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: ~ [[EX [[KdStarGStarP3kStarP3<=DAGE & 3<=KdStarG]] | [EG [2<=KdStar] | [[KdStarPgStarP2<=KdStarPgStar | KdStarPg<=GP3] | [KdStarGStarPgStarP2<=DAGE & 3<=GStarPgP3]]]]]
normalized: ~ [[EX [[KdStarGStarP3kStarP3<=DAGE & 3<=KdStarG]] | [EG [2<=KdStar] | [[KdStarGStarPgStarP2<=DAGE & 3<=GStarPgP3] | [KdStarPgStarP2<=KdStarPgStar | KdStarPg<=GP3]]]]]

abstracting: (KdStarPg<=GP3) states: 102
abstracting: (KdStarPgStarP2<=KdStarPgStar) states: 109
abstracting: (3<=GStarPgP3) states: 0
abstracting: (KdStarGStarPgStarP2<=DAGE) states: 108
abstracting: (2<=KdStar) states: 0
.
EG iterations: 1
abstracting: (3<=KdStarG) states: 0
abstracting: (KdStarGStarP3kStarP3<=DAGE) states: 108
.-> the formula is FALSE

FORMULA Angiogenesis-PT-01-CTLCardinality-6 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: [[[~ [1<=AktStar] | [[KdStarGStarP3kStarP2<=Pip2 & DAG<=GStarPgP3] & ~ [3<=DAG]]] & [[[2<=AktP3 | KdStarPgStar<=DAGE] | ~ [P3k<=GP3]] | 2<=Pip3]] | E [[KdStarGStarP3kStar<=KdStarGP3 & KdStarGStarPg<=Pip3] U 2<=P3k]]
normalized: [[[[[KdStarGStarP3kStarP2<=Pip2 & DAG<=GStarPgP3] & ~ [3<=DAG]] | ~ [1<=AktStar]] & [2<=Pip3 | [~ [P3k<=GP3] | [2<=AktP3 | KdStarPgStar<=DAGE]]]] | E [[KdStarGStarP3kStar<=KdStarGP3 & KdStarGStarPg<=Pip3] U 2<=P3k]]

abstracting: (2<=P3k) states: 0
abstracting: (KdStarGStarPg<=Pip3) states: 99
abstracting: (KdStarGStarP3kStar<=KdStarGP3) states: 97
abstracting: (KdStarPgStar<=DAGE) states: 103
abstracting: (2<=AktP3) states: 0
abstracting: (P3k<=GP3) states: 38
abstracting: (2<=Pip3) states: 0
abstracting: (1<=AktStar) states: 44
abstracting: (3<=DAG) states: 0
abstracting: (DAG<=GStarPgP3) states: 96
abstracting: (KdStarGStarP3kStarP2<=Pip2) states: 108
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-CTLCardinality-7 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: AX [[[Pip3<=KdStarGStarPgStarP2 | [1<=AktStar & PtP3<=KdStarGStarPgP3]] & [KdStarGStarP3kStarP2<=KdStarGStarPgStarP3P2 & [KdStarGStarP3kStarP3<=Pip2 | KdStarGStarP3kStarP3P2<=P3k]]]]
normalized: ~ [EX [~ [[[Pip3<=KdStarGStarPgStarP2 | [1<=AktStar & PtP3<=KdStarGStarPgP3]] & [KdStarGStarP3kStarP2<=KdStarGStarPgStarP3P2 & [KdStarGStarP3kStarP3<=Pip2 | KdStarGStarP3kStarP3P2<=P3k]]]]]]

abstracting: (KdStarGStarP3kStarP3P2<=P3k) states: 110
abstracting: (KdStarGStarP3kStarP3<=Pip2) states: 108
abstracting: (KdStarGStarP3kStarP2<=KdStarGStarPgStarP3P2) states: 108
abstracting: (PtP3<=KdStarGStarPgP3) states: 100
abstracting: (1<=AktStar) states: 44
abstracting: (Pip3<=KdStarGStarPgStarP2) states: 100
.-> the formula is TRUE

FORMULA Angiogenesis-PT-01-CTLCardinality-8 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: EF [AF [[1<=KdStar | 3<=KdStarGStarP3kStarP3P2]]]
normalized: E [true U ~ [EG [~ [[1<=KdStar | 3<=KdStarGStarP3kStarP3P2]]]]]

abstracting: (3<=KdStarGStarP3kStarP3P2) states: 0
abstracting: (1<=KdStar) states: 10
.
EG iterations: 1
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-CTLCardinality-9 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: ~ [~ [EG [AktStar<=DAG]]]
normalized: EG [AktStar<=DAG]

abstracting: (AktStar<=DAG) states: 71
..
EG iterations: 2
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-CTLCardinality-10 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: AX [3<=GStarPgP3]
normalized: ~ [EX [~ [3<=GStarPgP3]]]

abstracting: (3<=GStarPgP3) states: 0
.-> the formula is FALSE

FORMULA Angiogenesis-PT-01-CTLCardinality-11 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: P3k<=Pg
normalized: P3k<=Pg

abstracting: (P3k<=Pg) states: 63
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-CTLCardinality-12 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: EX [[~ [[Enz<=KdStarPg & PtP2<=KdStar]] | [1<=KdStarGStarPg | 3<=GP3]]]
normalized: EX [[[1<=KdStarGStarPg | 3<=GP3] | ~ [[Enz<=KdStarPg & PtP2<=KdStar]]]]

abstracting: (PtP2<=KdStar) states: 97
abstracting: (Enz<=KdStarPg) states: 21
abstracting: (3<=GP3) states: 0
abstracting: (1<=KdStarGStarPg) states: 13
.-> the formula is TRUE

FORMULA Angiogenesis-PT-01-CTLCardinality-13 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: GStarPgP3<=KdStarGStarPgStarP3
normalized: GStarPgP3<=KdStarGStarPgStarP3

abstracting: (GStarPgP3<=KdStarGStarPgStarP3) states: 108
-> the formula is TRUE

FORMULA Angiogenesis-PT-01-CTLCardinality-14 TRUE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec

checking: ~ [[~ [EF [3<=KdStarGStarPgStar]] | [1<=KdStarPg & KdStarGStarPgStarP2<=GStarP3kP3]]]
normalized: ~ [[~ [E [true U 3<=KdStarGStarPgStar]] | [1<=KdStarPg & KdStarGStarPgStarP2<=GStarP3kP3]]]

abstracting: (KdStarGStarPgStarP2<=GStarP3kP3) states: 108
abstracting: (1<=KdStarPg) states: 8
abstracting: (3<=KdStarGStarPgStar) states: 0
-> the formula is FALSE

FORMULA Angiogenesis-PT-01-CTLCardinality-15 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m0sec


Total processing time: 0m8sec


BK_STOP 1432328099569

--------------------
content from stderr:

check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m0sec


iterations count:820 (12), effective:56 (0)

initing FirstDep: 0m0sec


iterations count:412 (6), effective:22 (0)

iterations count:70 (1), effective:1 (0)

iterations count:64 (1), effective:0 (0)

iterations count:501 (7), effective:27 (0)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-01"
export BK_EXAMINATION="CTLCardinality"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/users/gast00/fkordon/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-01.tgz
mv Angiogenesis-PT-01 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2265"
echo " Executing tool marcie"
echo " Input is Angiogenesis-PT-01, examination is CTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r008kn-ebro-143214238800015"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLCardinality" = "ReachabilityComputeBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;