Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.................................
=====================================================================
Generated by BenchKit 2-2265
Executing tool classicSEQ
Input is Angiogenesis-PT-10, examination is ReachabilityCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r002kn-ebro-143214227500048
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-0
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-1
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-10
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-11
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-12
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-13
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-14
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-15
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-2
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-3
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-4
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-5
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-6
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-7
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-8
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-9

=== Now, execution of the tool begins

BK_START 1432274521285

---> classicSEQ --- TAPAAL Classic Sequential

**********************************************
TAPAAL classicSEQ verifying ReachabilityCardinality
**********************************************

verifypn -n -r 1 -x 1 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-10-ReachabilityCardinality-0: not EF not ( (("KdStarPg" <= "Enz") or not(("KdStarGStarPg" <= "PtP3P2"))) )

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-0 FALSE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.


verifypn -n -r 1 -x 2 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-10-ReachabilityCardinality-1: not EF not ( not(((("Pg" <= "Pip3") or (3 <= "KdStarGStarPgStarP2")) and not((1 <= "GStarP3")))) )

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-1 FALSE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.


verifypn -n -r 1 -x 3 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-10-ReachabilityCardinality-2: EF ( not((((1 <= "Pten") or (3 <= "KdStarGStarP3k")) or not(("Pip2" <= "KdStarPgStarP2")))) )

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-2 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


verifypn -n -r 1 -x 4 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-10-ReachabilityCardinality-3: not EF not ( not((((1 <= "KdStar") and (3 <= "KdStarGStarPg")) or (("GStarP3" <= "KdStarPgStar") and (3 <= "GP3")))) )

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-3 FALSE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.


verifypn -n -r 1 -x 5 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-10-ReachabilityCardinality-4: not EF not ( (2 <= "Pg") )

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-4 FALSE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.


verifypn -n -r 1 -x 6 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-10-ReachabilityCardinality-5: not EF not ( not(((2 <= "Pip3") or (3 <= "KdStarGStarPgStarP3"))) )

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-5 FALSE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.


verifypn -n -r 1 -x 7 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-10-ReachabilityCardinality-6: EF ( not((((2 <= "KdStarGStarP3kStarP3") and ("KdStarGStarPgP3" <= "KdStarGStarPgStarP3P2")) or ((2 <= "DAG") or ("KdStarPgStarP2" <= "Gab1")))) )

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-6 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


verifypn -n -r 1 -x 8 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-10-ReachabilityCardinality-7: not EF not ( ((((1 <= "KdStarGStarP3k") or (1 <= "KdStarGStarP3kStarP3")) and ((1 <= "Pip2") or (2 <= "GStarPgP3"))) or (not((1 <= "KdStarGStarP3kStarP3")) or ((1 <= "Pg") and (3 <= "KdStar")))) )

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-7 FALSE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.


verifypn -n -r 1 -x 9 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-10-ReachabilityCardinality-8: not EF not ( (((("Pg" <= "PtP3") or ("GStarP3" <= "KdStarGStarP3kStarP3")) and not((1 <= "KdStarGStarP3kStarP3"))) and not((("P3k" <= "KdStarPgStar") and (3 <= "KdStarGStarPgStarP3")))) )

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-8 FALSE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.


verifypn -n -r 1 -x 10 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-10-ReachabilityCardinality-9: EF ( (not(not((2 <= "PtP3"))) and not(((2 <= "KdStarGStarP3kStarP3") or (1 <= "KdStarGStarP3kStar")))) )

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-9 CANNOT_COMPUTE

verifypn -n -r 1 -x 11 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-10-ReachabilityCardinality-10: EF ( (2 <= "GP3") )

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-10 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


verifypn -n -r 1 -x 12 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-10-ReachabilityCardinality-11: not EF not ( ((3 <= "GStarP3") or (((1 <= "DAGE") and ("Enz" <= "KdStarGStarPgStarP3")) or ("Pten" <= "Pten"))) )

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-11 CANNOT_COMPUTE

verifypn -n -r 1 -x 13 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-10-ReachabilityCardinality-12: EF ( not((2 <= "Pg")) )

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-12 TRUE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is satisfied.


verifypn -n -r 1 -x 14 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-10-ReachabilityCardinality-13: not EF not ( (("KdStarGStarPg" <= "Pten") or not(not(("PtP3P2" <= "KdStarGStarP3kStarP3P2")))) )

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-13 FALSE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.


verifypn -n -r 1 -x 15 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-10-ReachabilityCardinality-14: not EF not ( (not(((2 <= "Pip3") and ("GStarPgP3" <= "KdStarG"))) or (((3 <= "KdStarGStarP3kStar") or (1 <= "Pten")) or ((2 <= "AktP3") or ("PtP3" <= "PtP2")))) )

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-14 CANNOT_COMPUTE

verifypn -n -r 1 -x 16 model.pnml ReachabilityCardinality.xml
Angiogenesis-PT-10-ReachabilityCardinality-15: not EF not ( ((((3 <= "KdStarGStarP3kStarP3P2") and ("KdStarGP3" <= "KdStarGStarPgStarP3")) or not((1 <= "KdStarGStarP3kStarP3"))) and (not(("KdStar" <= "DAGE")) and (("KdStarGP3" <= "Pip3") or (3 <= "KdStarGStarP3k")))) )

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-15 FALSE TECHNIQUES SEQUENTIAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION

Query is NOT satisfied.


BK_STOP 1432275466961

--------------------
content from stderr:

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-10"
export BK_EXAMINATION="ReachabilityCardinality"
export BK_TOOL="classicSEQ"
export BK_RESULT_DIR="/users/gast00/fkordon/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-10.tgz
mv Angiogenesis-PT-10 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-2265"
echo " Executing tool classicSEQ"
echo " Input is Angiogenesis-PT-10, examination is ReachabilityCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r002kn-ebro-143214227500048"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityCardinality" = "ReachabilityComputeBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;