Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/mnt/tpsp/fkordon/mcc2022-input.r006-tajo-165245689200366.qcow2', fmt=qcow2 size=4294967296 backing_file='/mnt/tpsp/fkordon/mcc2022-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
......................
=====================================================================
Generated by BenchKit 2-4028
Executing tool itstools
Input is Angiogenesis-PT-50, examination is ReachabilityCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r006-tajo-165245689200366
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 484K
-rw-r--r-- 1 mcc users 7.6K Apr 29 19:36 CTLCardinality.txt
-rw-r--r-- 1 mcc users 74K Apr 29 19:36 CTLCardinality.xml
-rw-r--r-- 1 mcc users 5.9K Apr 29 19:35 CTLFireability.txt
-rw-r--r-- 1 mcc users 58K Apr 29 19:35 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K May 10 09:33 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.5K May 10 09:33 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 3.9K May 9 07:03 LTLCardinality.txt
-rw-r--r-- 1 mcc users 25K May 9 07:03 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K May 9 07:03 LTLFireability.txt
-rw-r--r-- 1 mcc users 18K May 9 07:03 LTLFireability.xml
-rw-r--r-- 1 mcc users 12K Apr 29 19:37 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 113K Apr 29 19:37 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 7.6K Apr 29 19:37 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 67K Apr 29 19:37 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 9 07:03 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 9 07:03 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 10 09:33 equiv_col
-rw-r--r-- 1 mcc users 3 May 10 09:33 instance
-rw-r--r-- 1 mcc users 6 May 10 09:33 iscolored
-rw-r--r-- 1 mcc users 33K May 10 09:33 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-00
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-01
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-02
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-03
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-04
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-05
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-06
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-07
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-08
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-09
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-10
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-11
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-12
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-13
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-14
FORMULA_NAME Angiogenesis-PT-50-ReachabilityCardinality-15

=== Now, execution of the tool begins

BK_START 1654266814002

Running Version 202205111006
[2022-06-03 14:33:35] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityCardinality, -spotpath, /home/mcc/BenchKit/bin//..//ltlfilt, -z3path, /home/mcc/BenchKit/bin//..//z3/bin/z3, -yices2path, /home/mcc/BenchKit/bin//..//yices/bin/yices, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2022-06-03 14:33:35] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2022-06-03 14:33:35] [INFO ] Load time of PNML (sax parser for PT used): 56 ms
[2022-06-03 14:33:35] [INFO ] Transformed 39 places.
[2022-06-03 14:33:35] [INFO ] Transformed 64 transitions.
[2022-06-03 14:33:35] [INFO ] Parsed PT model containing 39 places and 64 transitions in 154 ms.
Parsed 16 properties from file /home/mcc/execution/ReachabilityCardinality.xml in 16 ms.
Working with output stream class java.io.PrintStream
Incomplete random walk after 10006 steps, including 2 resets, run finished after 103 ms. (steps per millisecond=97 ) properties (out of 16) seen :7
FORMULA Angiogenesis-PT-50-ReachabilityCardinality-15 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-50-ReachabilityCardinality-13 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-50-ReachabilityCardinality-11 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-50-ReachabilityCardinality-10 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-50-ReachabilityCardinality-09 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-50-ReachabilityCardinality-04 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
FORMULA Angiogenesis-PT-50-ReachabilityCardinality-01 TRUE TECHNIQUES TOPOLOGICAL RANDOM_WALK
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 101 ms. (steps per millisecond=99 ) properties (out of 9) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 50 ms. (steps per millisecond=200 ) properties (out of 9) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 77 ms. (steps per millisecond=129 ) properties (out of 9) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 47 ms. (steps per millisecond=212 ) properties (out of 9) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 71 ms. (steps per millisecond=140 ) properties (out of 9) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 34 ms. (steps per millisecond=294 ) properties (out of 9) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 42 ms. (steps per millisecond=238 ) properties (out of 9) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 34 ms. (steps per millisecond=294 ) properties (out of 9) seen :0
Incomplete Best-First random walk after 10001 steps, including 2 resets, run finished after 100 ms. (steps per millisecond=100 ) properties (out of 9) seen :0
Running SMT prover for 9 properties.
// Phase 1: matrix 64 rows 39 cols
[2022-06-03 14:33:36] [INFO ] Computed 8 place invariants in 8 ms
[2022-06-03 14:33:36] [INFO ] After 145ms SMT Verify possible using all constraints in real domain returned unsat :1 sat :0 real:8
[2022-06-03 14:33:36] [INFO ] [Nat]Absence check using 8 positive place invariants in 11 ms returned sat
[2022-06-03 14:33:36] [INFO ] After 54ms SMT Verify possible using state equation in natural domain returned unsat :3 sat :6
[2022-06-03 14:33:36] [INFO ] After 115ms SMT Verify possible using trap constraints in natural domain returned unsat :3 sat :6
Attempting to minimize the solution found.
Minimization took 49 ms.
[2022-06-03 14:33:36] [INFO ] After 239ms SMT Verify possible using all constraints in natural domain returned unsat :3 sat :6
FORMULA Angiogenesis-PT-50-ReachabilityCardinality-14 TRUE TECHNIQUES STRUCTURAL_REDUCTION TOPOLOGICAL SAT_SMT
FORMULA Angiogenesis-PT-50-ReachabilityCardinality-07 FALSE TECHNIQUES STRUCTURAL_REDUCTION TOPOLOGICAL SAT_SMT
FORMULA Angiogenesis-PT-50-ReachabilityCardinality-03 FALSE TECHNIQUES STRUCTURAL_REDUCTION TOPOLOGICAL SAT_SMT
Fused 9 Parikh solutions to 6 different solutions.
FORMULA Angiogenesis-PT-50-ReachabilityCardinality-00 FALSE TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA Angiogenesis-PT-50-ReachabilityCardinality-02 FALSE TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA Angiogenesis-PT-50-ReachabilityCardinality-05 FALSE TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA Angiogenesis-PT-50-ReachabilityCardinality-06 FALSE TECHNIQUES TOPOLOGICAL PARIKH_WALK
FORMULA Angiogenesis-PT-50-ReachabilityCardinality-12 TRUE TECHNIQUES TOPOLOGICAL PARIKH_WALK
Parikh walk visited 5 properties in 2565 ms.
Support contains 10 out of 39 places. Attempting structural reductions.
Starting structural reductions in SAFETY mode, iteration 0 : 39/39 places, 64/64 transitions.
Performed 1 Pre agglomeration using Quasi-Persistent + Divergent Free condition..
Pre-agglomeration after 0 with 1 Pre rules applied. Total rules applied 0 place count 39 transition count 63
Deduced a syphon composed of 1 places in 0 ms
Reduce places removed 2 places and 0 transitions.
Iterating global reduction 0 with 3 rules applied. Total rules applied 3 place count 37 transition count 63
Drop transitions removed 1 transitions
Reduce isomorphic transitions removed 1 transitions.
Iterating post reduction 0 with 1 rules applied. Total rules applied 4 place count 37 transition count 62
Performed 6 Post agglomeration using F-continuation condition.Transition count delta: 6
Deduced a syphon composed of 6 places in 0 ms
Reduce places removed 6 places and 0 transitions.
Iterating global reduction 1 with 12 rules applied. Total rules applied 16 place count 31 transition count 56
Drop transitions removed 5 transitions
Reduce isomorphic transitions removed 5 transitions.
Iterating post reduction 1 with 5 rules applied. Total rules applied 21 place count 31 transition count 51
Performed 1 Post agglomeration using F-continuation condition.Transition count delta: 0
Deduced a syphon composed of 1 places in 0 ms
Reduce places removed 1 places and 0 transitions.
Iterating global reduction 2 with 2 rules applied. Total rules applied 23 place count 30 transition count 51
Drop transitions removed 2 transitions
Reduce isomorphic transitions removed 2 transitions.
Iterating post reduction 2 with 2 rules applied. Total rules applied 25 place count 30 transition count 49
Free-agglomeration rule applied 3 times.
Iterating global reduction 3 with 3 rules applied. Total rules applied 28 place count 30 transition count 46
Reduce places removed 3 places and 0 transitions.
Drop transitions removed 2 transitions
Reduce isomorphic transitions removed 2 transitions.
Iterating post reduction 3 with 5 rules applied. Total rules applied 33 place count 27 transition count 44
Free-agglomeration rule (complex) applied 2 times.
Iterating global reduction 4 with 2 rules applied. Total rules applied 35 place count 27 transition count 42
Reduce places removed 2 places and 0 transitions.
Drop transitions removed 2 transitions
Reduce isomorphic transitions removed 2 transitions.
Iterating post reduction 4 with 4 rules applied. Total rules applied 39 place count 25 transition count 40
Partial Free-agglomeration rule applied 1 times.
Drop transitions removed 1 transitions
Iterating global reduction 5 with 1 rules applied. Total rules applied 40 place count 25 transition count 40
Partial Post-agglomeration rule applied 1 times.
Drop transitions removed 1 transitions
Iterating global reduction 5 with 1 rules applied. Total rules applied 41 place count 25 transition count 40
Applied a total of 41 rules in 34 ms. Remains 25 /39 variables (removed 14) and now considering 40/64 (removed 24) transitions.
Finished structural reductions, in 1 iterations. Remains : 25/39 places, 40/64 transitions.
Finished random walk after 9787 steps, including 0 resets, run visited all 1 properties in 5 ms. (steps per millisecond=1957 )
FORMULA Angiogenesis-PT-50-ReachabilityCardinality-08 FALSE TECHNIQUES TOPOLOGICAL RANDOM_WALK
All properties solved without resorting to model-checking.
Total runtime 3972 ms.

BK_STOP 1654266819363

--------------------
content from stderr:

+ export LANG=C
+ LANG=C
+ export BINDIR=/home/mcc/BenchKit/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ ReachabilityCardinality = StateSpace ]]
+ /home/mcc/BenchKit/bin//..//runeclipse.sh /home/mcc/execution ReachabilityCardinality -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ export PYTHONPATH=/usr/lib/python3.9/site-packages/
+ PYTHONPATH=/usr/lib/python3.9/site-packages/
+ export LD_LIBRARY_PATH=/usr/local/lib:
+ LD_LIBRARY_PATH=/usr/local/lib:
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
++ sed s/.jar//
++ perl -pe 's/.*\.//g'
++ ls /home/mcc/BenchKit/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202205111006.jar
+ VERSION=202205111006
+ echo 'Running Version 202205111006'
+ /home/mcc/BenchKit/bin//..//itstools/its-tools -data @none -pnfolder /home/mcc/execution -examination ReachabilityCardinality -spotpath /home/mcc/BenchKit/bin//..//ltlfilt -z3path /home/mcc/BenchKit/bin//..//z3/bin/z3 -yices2path /home/mcc/BenchKit/bin//..//yices/bin/yices -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=@none -Xss128m -Xms40m -Xmx8192m

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-50"
export BK_EXAMINATION="ReachabilityCardinality"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool itstools"
echo " Input is Angiogenesis-PT-50, examination is ReachabilityCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r006-tajo-165245689200366"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-50.tgz
mv Angiogenesis-PT-50 execution
cd execution
if [ "ReachabilityCardinality" = "ReachabilityDeadlock" ] || [ "ReachabilityCardinality" = "UpperBounds" ] || [ "ReachabilityCardinality" = "QuasiLiveness" ] || [ "ReachabilityCardinality" = "StableMarking" ] || [ "ReachabilityCardinality" = "Liveness" ] || [ "ReachabilityCardinality" = "OneSafe" ] || [ "ReachabilityCardinality" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "ReachabilityCardinality" = "ReachabilityDeadlock" ] || [ "ReachabilityCardinality" = "QuasiLiveness" ] || [ "ReachabilityCardinality" = "StableMarking" ] || [ "ReachabilityCardinality" = "Liveness" ] || [ "ReachabilityCardinality" = "OneSafe" ] ; then
echo "FORMULA_NAME ReachabilityCardinality"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;