Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/data/fkordon/mcc2021-input.r083-tall-162048875000100.qcow2', fmt=qcow2 size=4294967296 backing_file='/data/fkordon/mcc2021-input.qcow2' encryption=off cluster_size=65536 lazy_refcounts=off
Waiting for the VM to be ready (probing ssh)
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=====================================================================
Generated by BenchKit 2-4028
Executing tool itstools
Input is Diffusion2D-PT-D10N200, examination is LTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r083-tall-162048875000100
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 644K
-rw-r--r-- 1 mcc users 18K May 5 16:58 CTLCardinality.txt
-rw-r--r-- 1 mcc users 119K May 5 16:58 CTLCardinality.xml
-rw-r--r-- 1 mcc users 14K May 5 16:58 CTLFireability.txt
-rw-r--r-- 1 mcc users 88K May 5 16:58 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K May 6 14:48 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.3K May 6 14:48 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 4.2K Mar 28 16:02 LTLCardinality.txt
-rw-r--r-- 1 mcc users 28K Mar 28 16:02 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.3K Mar 28 16:02 LTLFireability.txt
-rw-r--r-- 1 mcc users 16K Mar 28 16:02 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K Mar 23 10:19 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 19K Mar 23 10:19 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 3.4K Mar 22 17:57 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 18K Mar 22 17:57 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K Mar 22 09:11 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Mar 22 09:11 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 5 16:51 equiv_col
-rw-r--r-- 1 mcc users 8 May 5 16:51 instance
-rw-r--r-- 1 mcc users 6 May 5 16:51 iscolored
-rw-r--r-- 1 mcc users 255K May 5 16:51 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Diffusion2D-PT-D10N200-00
FORMULA_NAME Diffusion2D-PT-D10N200-01
FORMULA_NAME Diffusion2D-PT-D10N200-02
FORMULA_NAME Diffusion2D-PT-D10N200-03
FORMULA_NAME Diffusion2D-PT-D10N200-04
FORMULA_NAME Diffusion2D-PT-D10N200-05
FORMULA_NAME Diffusion2D-PT-D10N200-06
FORMULA_NAME Diffusion2D-PT-D10N200-07
FORMULA_NAME Diffusion2D-PT-D10N200-08
FORMULA_NAME Diffusion2D-PT-D10N200-09
FORMULA_NAME Diffusion2D-PT-D10N200-10
FORMULA_NAME Diffusion2D-PT-D10N200-11
FORMULA_NAME Diffusion2D-PT-D10N200-12
FORMULA_NAME Diffusion2D-PT-D10N200-13
FORMULA_NAME Diffusion2D-PT-D10N200-14
FORMULA_NAME Diffusion2D-PT-D10N200-15

=== Now, execution of the tool begins

BK_START 1620541295132

Running Version 0
[2021-05-09 06:21:36] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, LTLCardinality, -spotpath, /home/mcc/BenchKit/bin//..//ltlfilt, -z3path, /home/mcc/BenchKit/bin//..//z3/bin/z3, -yices2path, /home/mcc/BenchKit/bin//..//yices/bin/yices, -its, -ltsmin, -greatspnpath, /home/mcc/BenchKit/bin//..//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2021-05-09 06:21:36] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2021-05-09 06:21:36] [INFO ] Load time of PNML (sax parser for PT used): 71 ms
[2021-05-09 06:21:36] [INFO ] Transformed 100 places.
[2021-05-09 06:21:36] [INFO ] Transformed 684 transitions.
[2021-05-09 06:21:36] [INFO ] Parsed PT model containing 100 places and 684 transitions in 112 ms.
Parsed 16 properties from file /home/mcc/execution/LTLCardinality.xml in 9 ms.
Working with output stream class java.io.PrintStream
[2021-05-09 06:21:36] [INFO ] Initial state test concluded for 2 properties.
FORMULA Diffusion2D-PT-D10N200-04 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
Support contains 39 out of 100 places. Attempting structural reductions.
Starting structural reductions, iteration 0 : 100/100 places, 684/684 transitions.
Applied a total of 0 rules in 17 ms. Remains 100 /100 variables (removed 0) and now considering 684/684 (removed 0) transitions.
// Phase 1: matrix 684 rows 100 cols
[2021-05-09 06:21:37] [INFO ] Computed 1 place invariants in 19 ms
[2021-05-09 06:21:37] [INFO ] Implicit Places using invariants in 120 ms returned []
// Phase 1: matrix 684 rows 100 cols
[2021-05-09 06:21:37] [INFO ] Computed 1 place invariants in 6 ms
[2021-05-09 06:21:37] [INFO ] Implicit Places using invariants and state equation in 149 ms returned []
Implicit Place search using SMT with State Equation took 294 ms to find 0 implicit places.
// Phase 1: matrix 684 rows 100 cols
[2021-05-09 06:21:37] [INFO ] Computed 1 place invariants in 3 ms
[2021-05-09 06:21:37] [INFO ] Dead Transitions using invariants and state equation in 247 ms returned []
Finished structural reductions, in 1 iterations. Remains : 100/100 places, 684/684 transitions.
[2021-05-09 06:21:37] [INFO ] Initial state reduction rules for LTL removed 2 formulas.
[2021-05-09 06:21:37] [INFO ] Flatten gal took : 67 ms
FORMULA Diffusion2D-PT-D10N200-06 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Diffusion2D-PT-D10N200-05 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
[2021-05-09 06:21:37] [INFO ] Flatten gal took : 29 ms
[2021-05-09 06:21:37] [INFO ] Input system was already deterministic with 684 transitions.
Finished random walk after 66529 steps, including 1 resets, run visited all 22 properties in 27 ms. (steps per millisecond=2464 )
Running Spot : CommandLine [args=[/home/mcc/BenchKit/bin//..//ltl2tgba, --hoaf=tv, -f, !(F(G(p0)))], workingDir=/home/mcc/execution]
Support contains 2 out of 100 places. Attempting structural reductions.
Starting structural reductions, iteration 0 : 100/100 places, 684/684 transitions.
Graph (trivial) has 662 edges and 100 vertex of which 98 / 100 are part of one of the 1 SCC in 3 ms
Free SCC test removed 97 places
Ensure Unique test removed 679 transitions
Reduce isomorphic transitions removed 679 transitions.
Applied a total of 1 rules in 13 ms. Remains 3 /100 variables (removed 97) and now considering 5/684 (removed 679) transitions.
// Phase 1: matrix 5 rows 3 cols
[2021-05-09 06:21:37] [INFO ] Computed 1 place invariants in 0 ms
[2021-05-09 06:21:38] [INFO ] Implicit Places using invariants in 11 ms returned []
// Phase 1: matrix 5 rows 3 cols
[2021-05-09 06:21:38] [INFO ] Computed 1 place invariants in 1 ms
[2021-05-09 06:21:38] [INFO ] Implicit Places using invariants and state equation in 16 ms returned []
Implicit Place search using SMT with State Equation took 30 ms to find 0 implicit places.
[2021-05-09 06:21:38] [INFO ] Redundant transitions in 0 ms returned []
// Phase 1: matrix 5 rows 3 cols
[2021-05-09 06:21:38] [INFO ] Computed 1 place invariants in 2 ms
[2021-05-09 06:21:38] [INFO ] Dead Transitions using invariants and state equation in 17 ms returned []
Finished structural reductions, in 1 iterations. Remains : 3/100 places, 5/684 transitions.
Stuttering acceptance computed with spot in 128 ms :[(NOT p0)]
Running random walk in product with property : Diffusion2D-PT-D10N200-00 automaton TGBA [mat=[[{ cond=(NOT p0), acceptance={0} source=0 dest: 0}, { cond=p0, acceptance={} source=0 dest: 0}]], initial=0, aps=[p0:(LEQ s1 s0)], nbAcceptance=1, properties=[trans-labels, explicit-labels, trans-acc, complete, deterministic, no-univ-branch, unambiguous, semi-deterministic, stutter-invariant], stateDesc=[null][true]]
Stuttering criterion allowed to conclude after 3 steps with 0 reset in 1 ms.
FORMULA Diffusion2D-PT-D10N200-00 FALSE TECHNIQUES STUTTER_TEST
Treatment of property Diffusion2D-PT-D10N200-00 finished in 261 ms.
Running Spot : CommandLine [args=[/home/mcc/BenchKit/bin//..//ltl2tgba, --hoaf=tv, -f, !(G(F((p0||G(p1)))))], workingDir=/home/mcc/execution]
Support contains 3 out of 100 places. Attempting structural reductions.
Starting structural reductions, iteration 0 : 100/100 places, 684/684 transitions.
Graph (trivial) has 636 edges and 100 vertex of which 97 / 100 are part of one of the 1 SCC in 1 ms
Free SCC test removed 96 places
Ensure Unique test removed 677 transitions
Reduce isomorphic transitions removed 677 transitions.
Applied a total of 1 rules in 4 ms. Remains 4 /100 variables (removed 96) and now considering 7/684 (removed 677) transitions.
// Phase 1: matrix 7 rows 4 cols
[2021-05-09 06:21:38] [INFO ] Computed 1 place invariants in 0 ms
[2021-05-09 06:21:38] [INFO ] Implicit Places using invariants in 6 ms returned []
// Phase 1: matrix 7 rows 4 cols
[2021-05-09 06:21:38] [INFO ] Computed 1 place invariants in 0 ms
[2021-05-09 06:21:38] [INFO ] Implicit Places using invariants and state equation in 12 ms returned []
Implicit Place search using SMT with State Equation took 19 ms to find 0 implicit places.
[2021-05-09 06:21:38] [INFO ] Redundant transitions in 0 ms returned []
// Phase 1: matrix 7 rows 4 cols
[2021-05-09 06:21:38] [INFO ] Computed 1 place invariants in 1 ms
[2021-05-09 06:21:38] [INFO ] Dead Transitions using invariants and state equation in 8 ms returned []
Finished structural reductions, in 1 iterations. Remains : 4/100 places, 7/684 transitions.
Stuttering acceptance computed with spot in 53 ms :[(AND (NOT p1) (NOT p0)), (AND (NOT p1) (NOT p0))]
Running random walk in product with property : Diffusion2D-PT-D10N200-01 automaton TGBA [mat=[[{ cond=true, acceptance={} source=0 dest: 0}, { cond=(AND (NOT p1) (NOT p0)), acceptance={} source=0 dest: 1}], [{ cond=(AND (NOT p1) (NOT p0)), acceptance={0} source=1 dest: 1}, { cond=(AND p1 (NOT p0)), acceptance={} source=1 dest: 1}]], initial=0, aps=[p1:(LEQ s0 s1), p0:(GT 2 s2)], nbAcceptance=1, properties=[trans-labels, explicit-labels, trans-acc, no-univ-branch, stutter-invariant], stateDesc=[null, null][true, true]]
Stuttering criterion allowed to conclude after 196 steps with 0 reset in 2 ms.
FORMULA Diffusion2D-PT-D10N200-01 FALSE TECHNIQUES STUTTER_TEST
Treatment of property Diffusion2D-PT-D10N200-01 finished in 104 ms.
Running Spot : CommandLine [args=[/home/mcc/BenchKit/bin//..//ltl2tgba, --hoaf=tv, -f, !(X((G(p0) U (p1&&G(p0)))))], workingDir=/home/mcc/execution]
Support contains 5 out of 100 places. Attempting structural reductions.
Starting structural reductions, iteration 0 : 100/100 places, 684/684 transitions.
Applied a total of 0 rules in 7 ms. Remains 100 /100 variables (removed 0) and now considering 684/684 (removed 0) transitions.
// Phase 1: matrix 684 rows 100 cols
[2021-05-09 06:21:38] [INFO ] Computed 1 place invariants in 2 ms
[2021-05-09 06:21:38] [INFO ] Implicit Places using invariants in 24 ms returned []
// Phase 1: matrix 684 rows 100 cols
[2021-05-09 06:21:38] [INFO ] Computed 1 place invariants in 5 ms
[2021-05-09 06:21:38] [INFO ] Implicit Places using invariants and state equation in 111 ms returned []
Implicit Place search using SMT with State Equation took 141 ms to find 0 implicit places.
// Phase 1: matrix 684 rows 100 cols
[2021-05-09 06:21:38] [INFO ] Computed 1 place invariants in 2 ms
[2021-05-09 06:21:38] [INFO ] Dead Transitions using invariants and state equation in 228 ms returned []
Finished structural reductions, in 1 iterations. Remains : 100/100 places, 684/684 transitions.
Stuttering acceptance computed with spot in 92 ms :[(NOT p0), (OR (NOT p0) (NOT p1)), true, (OR (NOT p1) (NOT p0))]
Running random walk in product with property : Diffusion2D-PT-D10N200-02 automaton TGBA [mat=[[{ cond=p0, acceptance={} source=0 dest: 0}, { cond=(NOT p0), acceptance={} source=0 dest: 2}], [{ cond=true, acceptance={} source=1 dest: 3}], [{ cond=true, acceptance={0} source=2 dest: 2}], [{ cond=(AND p1 p0), acceptance={0} source=3 dest: 0}, { cond=(NOT p0), acceptance={0} source=3 dest: 2}, { cond=(AND (NOT p1) p0), acceptance={0} source=3 dest: 3}]], initial=1, aps=[p0:(OR (GT s57 s76) (GT s53 s24)), p1:(LEQ 1 s98)], nbAcceptance=1, properties=[trans-labels, explicit-labels, trans-acc, complete, deterministic, no-univ-branch, unambiguous, semi-deterministic, very-weak, weak, inherently-weak], stateDesc=[null, null, null, null][false, false, false, false]]
Entered a terminal (fully accepting) state of product in 1 steps with 0 reset in 1 ms.
FORMULA Diffusion2D-PT-D10N200-02 FALSE TECHNIQUES STUTTER_TEST
Treatment of property Diffusion2D-PT-D10N200-02 finished in 488 ms.
Running Spot : CommandLine [args=[/home/mcc/BenchKit/bin//..//ltl2tgba, --hoaf=tv, -f, !(G((F(p0)&&F(G(p1)))))], workingDir=/home/mcc/execution]
Support contains 2 out of 100 places. Attempting structural reductions.
Starting structural reductions, iteration 0 : 100/100 places, 684/684 transitions.
Graph (trivial) has 652 edges and 100 vertex of which 98 / 100 are part of one of the 1 SCC in 1 ms
Free SCC test removed 97 places
Ensure Unique test removed 679 transitions
Reduce isomorphic transitions removed 679 transitions.
Applied a total of 1 rules in 3 ms. Remains 3 /100 variables (removed 97) and now considering 5/684 (removed 679) transitions.
// Phase 1: matrix 5 rows 3 cols
[2021-05-09 06:21:38] [INFO ] Computed 1 place invariants in 0 ms
[2021-05-09 06:21:38] [INFO ] Implicit Places using invariants in 6 ms returned []
// Phase 1: matrix 5 rows 3 cols
[2021-05-09 06:21:38] [INFO ] Computed 1 place invariants in 0 ms
[2021-05-09 06:21:38] [INFO ] Implicit Places using invariants and state equation in 8 ms returned []
Implicit Place search using SMT with State Equation took 14 ms to find 0 implicit places.
[2021-05-09 06:21:38] [INFO ] Redundant transitions in 0 ms returned []
// Phase 1: matrix 5 rows 3 cols
[2021-05-09 06:21:38] [INFO ] Computed 1 place invariants in 1 ms
[2021-05-09 06:21:38] [INFO ] Dead Transitions using invariants and state equation in 9 ms returned []
Finished structural reductions, in 1 iterations. Remains : 3/100 places, 5/684 transitions.
Stuttering acceptance computed with spot in 84 ms :[(OR (NOT p0) (NOT p1)), (NOT p0), (NOT p1)]
Running random walk in product with property : Diffusion2D-PT-D10N200-03 automaton TGBA [mat=[[{ cond=true, acceptance={} source=0 dest: 0}, { cond=(NOT p0), acceptance={} source=0 dest: 1}, { cond=(NOT p1), acceptance={} source=0 dest: 2}], [{ cond=(NOT p0), acceptance={0} source=1 dest: 1}], [{ cond=(NOT p1), acceptance={0} source=2 dest: 2}, { cond=p1, acceptance={} source=2 dest: 2}]], initial=0, aps=[p0:(LEQ 1 s1), p1:(OR (LEQ 1 s1) (LEQ 2 s0))], nbAcceptance=1, properties=[trans-labels, explicit-labels, trans-acc, no-univ-branch, stutter-invariant], stateDesc=[null, null, null][true, true, true]]
Stuttering criterion allowed to conclude after 0 steps with 0 reset in 0 ms.
FORMULA Diffusion2D-PT-D10N200-03 FALSE TECHNIQUES STUTTER_TEST
Treatment of property Diffusion2D-PT-D10N200-03 finished in 123 ms.
Running Spot : CommandLine [args=[/home/mcc/BenchKit/bin//..//ltl2tgba, --hoaf=tv, -f, !(X((p0||X((p1||G(F(p1)))))))], workingDir=/home/mcc/execution]
Support contains 2 out of 100 places. Attempting structural reductions.
Starting structural reductions, iteration 0 : 100/100 places, 684/684 transitions.
Applied a total of 0 rules in 9 ms. Remains 100 /100 variables (removed 0) and now considering 684/684 (removed 0) transitions.
// Phase 1: matrix 684 rows 100 cols
[2021-05-09 06:21:38] [INFO ] Computed 1 place invariants in 2 ms
[2021-05-09 06:21:38] [INFO ] Implicit Places using invariants in 19 ms returned []
// Phase 1: matrix 684 rows 100 cols
[2021-05-09 06:21:38] [INFO ] Computed 1 place invariants in 10 ms
[2021-05-09 06:21:39] [INFO ] Implicit Places using invariants and state equation in 110 ms returned []
Implicit Place search using SMT with State Equation took 131 ms to find 0 implicit places.
// Phase 1: matrix 684 rows 100 cols
[2021-05-09 06:21:39] [INFO ] Computed 1 place invariants in 3 ms
[2021-05-09 06:21:39] [INFO ] Dead Transitions using invariants and state equation in 221 ms returned []
Finished structural reductions, in 1 iterations. Remains : 100/100 places, 684/684 transitions.
Stuttering acceptance computed with spot in 125 ms :[(AND (NOT p0) (NOT p1)), (AND (NOT p0) (NOT p1)), (NOT p1), (NOT p1), (NOT p1)]
Running random walk in product with property : Diffusion2D-PT-D10N200-07 automaton TGBA [mat=[[{ cond=true, acceptance={} source=0 dest: 1}], [{ cond=(NOT p0), acceptance={} source=1 dest: 2}], [{ cond=(NOT p1), acceptance={} source=2 dest: 3}, { cond=(NOT p1), acceptance={} source=2 dest: 4}], [{ cond=(NOT p1), acceptance={0} source=3 dest: 3}], [{ cond=(NOT p1), acceptance={} source=4 dest: 3}, { cond=true, acceptance={} source=4 dest: 4}]], initial=0, aps=[p0:(GT 3 s4), p1:(GT 1 s58)], nbAcceptance=1, properties=[trans-labels, explicit-labels, trans-acc, no-univ-branch, very-weak, weak, inherently-weak], stateDesc=[null, null, null, null, null][false, false, false, false, false]]
Product exploration explored 100000 steps with 50000 reset in 312 ms.
Product exploration explored 100000 steps with 50000 reset in 239 ms.
Knowledge obtained : [p0, p1]
Stuttering acceptance computed with spot in 113 ms :[(AND (NOT p0) (NOT p1)), (AND (NOT p0) (NOT p1)), (NOT p1), (NOT p1), (NOT p1)]
Product exploration explored 100000 steps with 50000 reset in 180 ms.
Product exploration explored 100000 steps with 50000 reset in 163 ms.
Applying partial POR strategy [false, false, true, true, true]
Stuttering acceptance computed with spot in 105 ms :[(AND (NOT p0) (NOT p1)), (AND (NOT p0) (NOT p1)), (NOT p1), (NOT p1), (NOT p1)]
Support contains 2 out of 100 places. Attempting structural reductions.
Property had overlarge support with respect to TGBA, discarding it for now.
Starting structural reductions, iteration 0 : 100/100 places, 684/684 transitions.
Graph (trivial) has 658 edges and 100 vertex of which 98 / 100 are part of one of the 1 SCC in 1 ms
Free SCC test removed 97 places
Ensure Unique test removed 679 transitions
Reduce isomorphic transitions removed 679 transitions.
Applied a total of 1 rules in 3 ms. Remains 3 /100 variables (removed 97) and now considering 5/684 (removed 679) transitions.
[2021-05-09 06:21:40] [INFO ] Redundant transitions in 0 ms returned []
// Phase 1: matrix 5 rows 3 cols
[2021-05-09 06:21:40] [INFO ] Computed 1 place invariants in 1 ms
[2021-05-09 06:21:40] [INFO ] Dead Transitions using invariants and state equation in 7 ms returned []
Finished structural reductions, in 1 iterations. Remains : 3/100 places, 5/684 transitions.
Product exploration explored 100000 steps with 50000 reset in 235 ms.
Product exploration explored 100000 steps with 50000 reset in 196 ms.
[2021-05-09 06:21:41] [INFO ] Flatten gal took : 24 ms
[2021-05-09 06:21:41] [INFO ] Flatten gal took : 22 ms
[2021-05-09 06:21:41] [INFO ] Time to serialize gal into /tmp/LTL5781554317343102169.gal : 13 ms
[2021-05-09 06:21:41] [INFO ] Time to serialize properties into /tmp/LTL13997538187159957075.ltl : 60 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /tmp/LTL5781554317343102169.gal, -t, CGAL, -LTL, /tmp/LTL13997538187159957075.ltl, -c, -stutter-deadlock, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ltl-linux64 --gc-threshold 2000000 -i /tmp/LTL5781554317343102169.gal -t CGAL -LTL /tmp/LTL13997538187159957075.ltl -c -stutter-deadlock --gen-order FOLLOW
Read 1 LTL properties
Checking formula 0 : !((X(("(cAMP__10_4_<3)")||(X(("(cAMP__5_8_<1)")||(G(F("(cAMP__5_8_<1)"))))))))
Formula 0 simplified : !X("(cAMP__10_4_<3)" | X("(cAMP__5_8_<1)" | GF"(cAMP__5_8_<1)"))
Detected timeout of ITS tools.
[2021-05-09 06:21:56] [INFO ] Flatten gal took : 31 ms
[2021-05-09 06:21:56] [INFO ] Applying decomposition
[2021-05-09 06:21:56] [INFO ] Flatten gal took : 20 ms
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/convert-linux64, -i, /tmp/graph12802180946721996057.txt, -o, /tmp/graph12802180946721996057.bin, -w, /tmp/graph12802180946721996057.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/louvain-linux64, /tmp/graph12802180946721996057.bin, -l, -1, -v, -w, /tmp/graph12802180946721996057.weights, -q, 0, -e, 0.001], workingDir=null]
[2021-05-09 06:21:56] [INFO ] Decomposing Gal with order
[2021-05-09 06:21:56] [INFO ] Rewriting arrays to variables to allow decomposition.
[2021-05-09 06:21:56] [INFO ] Removed a total of 436 redundant transitions.
[2021-05-09 06:21:56] [INFO ] Flatten gal took : 74 ms
[2021-05-09 06:21:56] [INFO ] Fuse similar labels procedure discarded/fused a total of 12 labels/synchronizations in 8 ms.
[2021-05-09 06:21:56] [INFO ] Time to serialize gal into /tmp/LTL7923746528044281974.gal : 7 ms
[2021-05-09 06:21:56] [INFO ] Time to serialize properties into /tmp/LTL18195946580573361014.ltl : 0 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /tmp/LTL7923746528044281974.gal, -t, CGAL, -LTL, /tmp/LTL18195946580573361014.ltl, -c, -stutter-deadlock], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ltl-linux64 --gc-threshold 2000000 -i /tmp/LTL7923746528044281974.gal -t CGAL -LTL /tmp/LTL18195946580573361014.ltl -c -stutter-deadlock
Read 1 LTL properties
Checking formula 0 : !((X(("(i0.u1.cAMP__10_4_<3)")||(X(("(u12.cAMP__5_8_<1)")||(G(F("(u12.cAMP__5_8_<1)"))))))))
Formula 0 simplified : !X("(i0.u1.cAMP__10_4_<3)" | X("(u12.cAMP__5_8_<1)" | GF"(u12.cAMP__5_8_<1)"))
Detected timeout of ITS tools.
Built C files in :
/tmp/ltsmin10271237785709108080
[2021-05-09 06:22:11] [INFO ] Built C files in 18ms conformant to PINS (ltsmin variant)in folder :/tmp/ltsmin10271237785709108080
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202104292328/bin/include/, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/tmp/ltsmin10271237785709108080]
WARNING : LTS min runner thread failed on error :java.lang.RuntimeException: Compilation or link of executable timed out.java.util.concurrent.TimeoutException: Subprocess running CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202104292328/bin/include/, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/tmp/ltsmin10271237785709108080] killed by timeout after 1 SECONDS
java.lang.RuntimeException: Compilation or link of executable timed out.java.util.concurrent.TimeoutException: Subprocess running CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202104292328/bin/include/, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/tmp/ltsmin10271237785709108080] killed by timeout after 1 SECONDS
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:79)
at java.base/java.lang.Thread.run(Thread.java:834)
Treatment of property Diffusion2D-PT-D10N200-07 finished in 33781 ms.
Running Spot : CommandLine [args=[/home/mcc/BenchKit/bin//..//ltl2tgba, --hoaf=tv, -f, !(X((G(p0)||(p0&&F(p1)))))], workingDir=/home/mcc/execution]
Support contains 3 out of 100 places. Attempting structural reductions.
Starting structural reductions, iteration 0 : 100/100 places, 684/684 transitions.
Applied a total of 0 rules in 7 ms. Remains 100 /100 variables (removed 0) and now considering 684/684 (removed 0) transitions.
// Phase 1: matrix 684 rows 100 cols
[2021-05-09 06:22:12] [INFO ] Computed 1 place invariants in 2 ms
[2021-05-09 06:22:12] [INFO ] Implicit Places using invariants in 39 ms returned []
// Phase 1: matrix 684 rows 100 cols
[2021-05-09 06:22:12] [INFO ] Computed 1 place invariants in 2 ms
[2021-05-09 06:22:12] [INFO ] Implicit Places using invariants and state equation in 129 ms returned []
Implicit Place search using SMT with State Equation took 170 ms to find 0 implicit places.
// Phase 1: matrix 684 rows 100 cols
[2021-05-09 06:22:12] [INFO ] Computed 1 place invariants in 7 ms
[2021-05-09 06:22:13] [INFO ] Dead Transitions using invariants and state equation in 207 ms returned []
Finished structural reductions, in 1 iterations. Remains : 100/100 places, 684/684 transitions.
Stuttering acceptance computed with spot in 113 ms :[true, (NOT p1), (NOT p0), (NOT p0), (AND (NOT p1) (NOT p0))]
Running random walk in product with property : Diffusion2D-PT-D10N200-08 automaton TGBA [mat=[[{ cond=true, acceptance={0} source=0 dest: 0}], [{ cond=(NOT p1), acceptance={0} source=1 dest: 1}], [{ cond=true, acceptance={} source=2 dest: 3}], [{ cond=(NOT p0), acceptance={} source=3 dest: 0}, { cond=(AND p0 (NOT p1)), acceptance={} source=3 dest: 4}], [{ cond=(AND (NOT p0) (NOT p1)), acceptance={} source=4 dest: 1}, { cond=(AND p0 (NOT p1)), acceptance={} source=4 dest: 4}]], initial=2, aps=[p1:(GT 3 s37), p0:(GT s77 s4)], nbAcceptance=1, properties=[trans-labels, explicit-labels, trans-acc, deterministic, no-univ-branch, unambiguous, semi-deterministic, very-weak, weak, inherently-weak], stateDesc=[null, null, null, null, null][false, false, false, false, false]]
Entered a terminal (fully accepting) state of product in 1 steps with 0 reset in 0 ms.
FORMULA Diffusion2D-PT-D10N200-08 FALSE TECHNIQUES STUTTER_TEST
Treatment of property Diffusion2D-PT-D10N200-08 finished in 514 ms.
Running Spot : CommandLine [args=[/home/mcc/BenchKit/bin//..//ltl2tgba, --hoaf=tv, -f, !(X(F((p0||X((p1||X((p0||G(F(p1))))))))))], workingDir=/home/mcc/execution]
Support contains 3 out of 100 places. Attempting structural reductions.
Starting structural reductions, iteration 0 : 100/100 places, 684/684 transitions.
Applied a total of 0 rules in 4 ms. Remains 100 /100 variables (removed 0) and now considering 684/684 (removed 0) transitions.
// Phase 1: matrix 684 rows 100 cols
[2021-05-09 06:22:13] [INFO ] Computed 1 place invariants in 2 ms
[2021-05-09 06:22:13] [INFO ] Implicit Places using invariants in 30 ms returned []
// Phase 1: matrix 684 rows 100 cols
[2021-05-09 06:22:13] [INFO ] Computed 1 place invariants in 1 ms
[2021-05-09 06:22:13] [INFO ] Implicit Places using invariants and state equation in 83 ms returned []
Implicit Place search using SMT with State Equation took 118 ms to find 0 implicit places.
// Phase 1: matrix 684 rows 100 cols
[2021-05-09 06:22:13] [INFO ] Computed 1 place invariants in 2 ms
[2021-05-09 06:22:13] [INFO ] Dead Transitions using invariants and state equation in 230 ms returned []
Finished structural reductions, in 1 iterations. Remains : 100/100 places, 684/684 transitions.
Stuttering acceptance computed with spot in 72 ms :[(AND (NOT p0) (NOT p1)), (AND (NOT p0) (NOT p1)), (AND (NOT p0) (NOT p1))]
Running random walk in product with property : Diffusion2D-PT-D10N200-09 automaton TGBA [mat=[[{ cond=true, acceptance={} source=0 dest: 1}], [{ cond=(NOT p0), acceptance={} source=1 dest: 2}], [{ cond=(AND (NOT p0) (NOT p1)), acceptance={0} source=2 dest: 2}]], initial=0, aps=[p0:(GT 2 s28), p1:(GT s27 s40)], nbAcceptance=1, properties=[trans-labels, explicit-labels, trans-acc, deterministic, no-univ-branch, unambiguous, semi-deterministic, very-weak, weak, inherently-weak], stateDesc=[null, null, null][false, false, false]]
Product exploration explored 100000 steps with 50000 reset in 167 ms.
Product exploration explored 100000 steps with 50000 reset in 148 ms.
Knowledge obtained : [p0, (NOT p1)]
Stuttering acceptance computed with spot in 65 ms :[(AND (NOT p0) (NOT p1)), (AND (NOT p0) (NOT p1)), (AND (NOT p0) (NOT p1))]
Product exploration explored 100000 steps with 50000 reset in 145 ms.
Product exploration explored 100000 steps with 50000 reset in 159 ms.
Applying partial POR strategy [false, false, true]
Stuttering acceptance computed with spot in 67 ms :[(AND (NOT p0) (NOT p1)), (AND (NOT p0) (NOT p1)), (AND (NOT p0) (NOT p1))]
Support contains 3 out of 100 places. Attempting structural reductions.
Property had overlarge support with respect to TGBA, discarding it for now.
Starting structural reductions, iteration 0 : 100/100 places, 684/684 transitions.
Graph (trivial) has 644 edges and 100 vertex of which 97 / 100 are part of one of the 1 SCC in 1 ms
Free SCC test removed 96 places
Ensure Unique test removed 675 transitions
Reduce isomorphic transitions removed 675 transitions.
Applied a total of 1 rules in 3 ms. Remains 4 /100 variables (removed 96) and now considering 9/684 (removed 675) transitions.
[2021-05-09 06:22:14] [INFO ] Redundant transitions in 1 ms returned []
// Phase 1: matrix 9 rows 4 cols
[2021-05-09 06:22:14] [INFO ] Computed 1 place invariants in 0 ms
[2021-05-09 06:22:14] [INFO ] Dead Transitions using invariants and state equation in 14 ms returned []
Finished structural reductions, in 1 iterations. Remains : 4/100 places, 9/684 transitions.
Product exploration explored 100000 steps with 50000 reset in 159 ms.
Product exploration explored 100000 steps with 50000 reset in 170 ms.
[2021-05-09 06:22:14] [INFO ] Flatten gal took : 20 ms
[2021-05-09 06:22:14] [INFO ] Flatten gal took : 19 ms
[2021-05-09 06:22:14] [INFO ] Time to serialize gal into /tmp/LTL18348886257324858898.gal : 2 ms
[2021-05-09 06:22:14] [INFO ] Time to serialize properties into /tmp/LTL9687177039857609003.ltl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /tmp/LTL18348886257324858898.gal, -t, CGAL, -LTL, /tmp/LTL9687177039857609003.ltl, -c, -stutter-deadlock, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ltl-linux64 --gc-threshold 2000000 -i /tmp/LTL18348886257324858898.gal -t CGAL -LTL /tmp/LTL9687177039857609003.ltl -c -stutter-deadlock --gen-order FOLLOW
Read 1 LTL properties
Checking formula 0 : !((X(F(("(cAMP__2_8_<2)")||(X(("(cAMP__2_7_>cAMP__4_10_)")||(X(("(cAMP__2_8_<2)")||(G(F("(cAMP__2_7_>cAMP__4_10_)")))))))))))
Formula 0 simplified : !XF("(cAMP__2_8_<2)" | X("(cAMP__2_7_>cAMP__4_10_)" | X("(cAMP__2_8_<2)" | GF"(cAMP__2_7_>cAMP__4_10_)")))
Detected timeout of ITS tools.
[2021-05-09 06:22:29] [INFO ] Flatten gal took : 19 ms
[2021-05-09 06:22:29] [INFO ] Applying decomposition
[2021-05-09 06:22:29] [INFO ] Flatten gal took : 16 ms
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/convert-linux64, -i, /tmp/graph18130865188157822061.txt, -o, /tmp/graph18130865188157822061.bin, -w, /tmp/graph18130865188157822061.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/louvain-linux64, /tmp/graph18130865188157822061.bin, -l, -1, -v, -w, /tmp/graph18130865188157822061.weights, -q, 0, -e, 0.001], workingDir=null]
[2021-05-09 06:22:30] [INFO ] Decomposing Gal with order
[2021-05-09 06:22:30] [INFO ] Rewriting arrays to variables to allow decomposition.
[2021-05-09 06:22:30] [INFO ] Removed a total of 442 redundant transitions.
[2021-05-09 06:22:30] [INFO ] Flatten gal took : 40 ms
[2021-05-09 06:22:30] [INFO ] Fuse similar labels procedure discarded/fused a total of 40 labels/synchronizations in 4 ms.
[2021-05-09 06:22:30] [INFO ] Time to serialize gal into /tmp/LTL18311376066943596728.gal : 3 ms
[2021-05-09 06:22:30] [INFO ] Time to serialize properties into /tmp/LTL868260348280015845.ltl : 0 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /tmp/LTL18311376066943596728.gal, -t, CGAL, -LTL, /tmp/LTL868260348280015845.ltl, -c, -stutter-deadlock, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ltl-linux64 --gc-threshold 2000000 -i /tmp/LTL18311376066943596728.gal -t CGAL -LTL /tmp/LTL868260348280015845.ltl -c -stutter-deadlock --gen-order FOLLOW
Read 1 LTL properties
Checking formula 0 : !((X(F(("(gi1.gi1.gu7.cAMP__2_8_<2)")||(X(("(gu8.cAMP__2_7_>gu8.cAMP__4_10_)")||(X(("(gi1.gi1.gu7.cAMP__2_8_<2)")||(G(F("(gu8.cAMP__2_7_>gu8.cAMP__4_10_)")))))))))))
Formula 0 simplified : !XF("(gi1.gi1.gu7.cAMP__2_8_<2)" | X("(gu8.cAMP__2_7_>gu8.cAMP__4_10_)" | X("(gi1.gi1.gu7.cAMP__2_8_<2)" | GF"(gu8.cAMP__2_7_>gu8.cAMP__4_10_)")))
Detected timeout of ITS tools.
Built C files in :
/tmp/ltsmin9857120611771580574
[2021-05-09 06:22:45] [INFO ] Built C files in 8ms conformant to PINS (ltsmin variant)in folder :/tmp/ltsmin9857120611771580574
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202104292328/bin/include/, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/tmp/ltsmin9857120611771580574]
WARNING : LTS min runner thread failed on error :java.lang.RuntimeException: Compilation or link of executable timed out.java.util.concurrent.TimeoutException: Subprocess running CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202104292328/bin/include/, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/tmp/ltsmin9857120611771580574] killed by timeout after 1 SECONDS
java.lang.RuntimeException: Compilation or link of executable timed out.java.util.concurrent.TimeoutException: Subprocess running CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202104292328/bin/include/, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/tmp/ltsmin9857120611771580574] killed by timeout after 1 SECONDS
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:79)
at java.base/java.lang.Thread.run(Thread.java:834)
Treatment of property Diffusion2D-PT-D10N200-09 finished in 32963 ms.
Running Spot : CommandLine [args=[/home/mcc/BenchKit/bin//..//ltl2tgba, --hoaf=tv, -f, !(F((G(p0)||G(p1))))], workingDir=/home/mcc/execution]
Support contains 5 out of 100 places. Attempting structural reductions.
Starting structural reductions, iteration 0 : 100/100 places, 684/684 transitions.
Graph (trivial) has 604 edges and 100 vertex of which 95 / 100 are part of one of the 1 SCC in 1 ms
Free SCC test removed 94 places
Ensure Unique test removed 673 transitions
Reduce isomorphic transitions removed 673 transitions.
Applied a total of 1 rules in 2 ms. Remains 6 /100 variables (removed 94) and now considering 11/684 (removed 673) transitions.
// Phase 1: matrix 11 rows 6 cols
[2021-05-09 06:22:46] [INFO ] Computed 1 place invariants in 0 ms
[2021-05-09 06:22:46] [INFO ] Implicit Places using invariants in 15 ms returned []
// Phase 1: matrix 11 rows 6 cols
[2021-05-09 06:22:46] [INFO ] Computed 1 place invariants in 0 ms
[2021-05-09 06:22:46] [INFO ] State equation strengthened by 1 read => feed constraints.
[2021-05-09 06:22:46] [INFO ] Implicit Places using invariants and state equation in 29 ms returned []
Implicit Place search using SMT with State Equation took 44 ms to find 0 implicit places.
[2021-05-09 06:22:46] [INFO ] Redundant transitions in 0 ms returned []
// Phase 1: matrix 11 rows 6 cols
[2021-05-09 06:22:46] [INFO ] Computed 1 place invariants in 0 ms
[2021-05-09 06:22:46] [INFO ] Dead Transitions using invariants and state equation in 9 ms returned []
Finished structural reductions, in 1 iterations. Remains : 6/100 places, 11/684 transitions.
Stuttering acceptance computed with spot in 40 ms :[(AND (NOT p0) (NOT p1))]
Running random walk in product with property : Diffusion2D-PT-D10N200-10 automaton TGBA [mat=[[{ cond=(AND (NOT p0) (NOT p1)), acceptance={0, 1} source=0 dest: 0}, { cond=(AND (NOT p0) p1), acceptance={0} source=0 dest: 0}, { cond=(AND p0 (NOT p1)), acceptance={1} source=0 dest: 0}, { cond=(AND p0 p1), acceptance={} source=0 dest: 0}]], initial=0, aps=[p0:(GT s4 s0), p1:(OR (GT 3 s2) (GT s3 s1))], nbAcceptance=2, properties=[trans-labels, explicit-labels, trans-acc, complete, deterministic, no-univ-branch, unambiguous, semi-deterministic, stutter-invariant], stateDesc=[null][true]]
Stuttering criterion allowed to conclude after 95212 steps with 0 reset in 147 ms.
FORMULA Diffusion2D-PT-D10N200-10 FALSE TECHNIQUES STUTTER_TEST
Treatment of property Diffusion2D-PT-D10N200-10 finished in 260 ms.
Running Spot : CommandLine [args=[/home/mcc/BenchKit/bin//..//ltl2tgba, --hoaf=tv, -f, !(G(p0))], workingDir=/home/mcc/execution]
Support contains 2 out of 100 places. Attempting structural reductions.
Starting structural reductions, iteration 0 : 100/100 places, 684/684 transitions.
Graph (trivial) has 662 edges and 100 vertex of which 98 / 100 are part of one of the 1 SCC in 1 ms
Free SCC test removed 97 places
Ensure Unique test removed 679 transitions
Reduce isomorphic transitions removed 679 transitions.
Applied a total of 1 rules in 2 ms. Remains 3 /100 variables (removed 97) and now considering 5/684 (removed 679) transitions.
// Phase 1: matrix 5 rows 3 cols
[2021-05-09 06:22:46] [INFO ] Computed 1 place invariants in 0 ms
[2021-05-09 06:22:46] [INFO ] Implicit Places using invariants in 7 ms returned []
// Phase 1: matrix 5 rows 3 cols
[2021-05-09 06:22:46] [INFO ] Computed 1 place invariants in 0 ms
[2021-05-09 06:22:46] [INFO ] Implicit Places using invariants and state equation in 7 ms returned []
Implicit Place search using SMT with State Equation took 15 ms to find 0 implicit places.
[2021-05-09 06:22:46] [INFO ] Redundant transitions in 0 ms returned []
// Phase 1: matrix 5 rows 3 cols
[2021-05-09 06:22:46] [INFO ] Computed 1 place invariants in 1 ms
[2021-05-09 06:22:46] [INFO ] Dead Transitions using invariants and state equation in 9 ms returned []
Finished structural reductions, in 1 iterations. Remains : 3/100 places, 5/684 transitions.
Stuttering acceptance computed with spot in 35 ms :[true, (NOT p0)]
Running random walk in product with property : Diffusion2D-PT-D10N200-11 automaton TGBA [mat=[[{ cond=true, acceptance={0} source=0 dest: 0}], [{ cond=(NOT p0), acceptance={} source=1 dest: 0}, { cond=p0, acceptance={} source=1 dest: 1}]], initial=1, aps=[p0:(LEQ s1 s0)], nbAcceptance=1, properties=[trans-labels, explicit-labels, trans-acc, complete, deterministic, no-univ-branch, unambiguous, semi-deterministic, stutter-invariant, terminal, very-weak, weak, inherently-weak], stateDesc=[null, null][true, true]]
Entered a terminal (fully accepting) state of product in 4 steps with 0 reset in 0 ms.
FORMULA Diffusion2D-PT-D10N200-11 FALSE TECHNIQUES STUTTER_TEST
Treatment of property Diffusion2D-PT-D10N200-11 finished in 76 ms.
Running Spot : CommandLine [args=[/home/mcc/BenchKit/bin//..//ltl2tgba, --hoaf=tv, -f, !(X(F((p0||X(X((p1||G(F(p0)))))))))], workingDir=/home/mcc/execution]
Support contains 4 out of 100 places. Attempting structural reductions.
Starting structural reductions, iteration 0 : 100/100 places, 684/684 transitions.
Applied a total of 0 rules in 3 ms. Remains 100 /100 variables (removed 0) and now considering 684/684 (removed 0) transitions.
// Phase 1: matrix 684 rows 100 cols
[2021-05-09 06:22:46] [INFO ] Computed 1 place invariants in 2 ms
[2021-05-09 06:22:46] [INFO ] Implicit Places using invariants in 16 ms returned []
// Phase 1: matrix 684 rows 100 cols
[2021-05-09 06:22:46] [INFO ] Computed 1 place invariants in 2 ms
[2021-05-09 06:22:46] [INFO ] Implicit Places using invariants and state equation in 86 ms returned []
Implicit Place search using SMT with State Equation took 103 ms to find 0 implicit places.
// Phase 1: matrix 684 rows 100 cols
[2021-05-09 06:22:46] [INFO ] Computed 1 place invariants in 2 ms
[2021-05-09 06:22:46] [INFO ] Dead Transitions using invariants and state equation in 234 ms returned []
Finished structural reductions, in 1 iterations. Remains : 100/100 places, 684/684 transitions.
Stuttering acceptance computed with spot in 143 ms :[(AND (NOT p0) (NOT p1)), (AND (NOT p0) (NOT p1)), (AND (NOT p0) (NOT p1)), (AND (NOT p0) (NOT p1))]
Running random walk in product with property : Diffusion2D-PT-D10N200-12 automaton TGBA [mat=[[{ cond=true, acceptance={} source=0 dest: 2}], [{ cond=(NOT p0), acceptance={} source=1 dest: 3}], [{ cond=(NOT p0), acceptance={} source=2 dest: 1}], [{ cond=(AND (NOT p0) (NOT p1)), acceptance={0} source=3 dest: 3}]], initial=0, aps=[p0:(LEQ s95 s31), p1:(GT s6 s15)], nbAcceptance=1, properties=[trans-labels, explicit-labels, trans-acc, deterministic, no-univ-branch, unambiguous, semi-deterministic, very-weak, weak, inherently-weak], stateDesc=[null, null, null, null][false, false, false, false]]
Product exploration explored 100000 steps with 50000 reset in 159 ms.
Product exploration explored 100000 steps with 50000 reset in 173 ms.
Knowledge obtained : [p0, (NOT p1)]
Stuttering acceptance computed with spot in 162 ms :[(AND (NOT p0) (NOT p1)), (AND (NOT p0) (NOT p1)), (AND (NOT p0) (NOT p1)), (AND (NOT p0) (NOT p1))]
Product exploration explored 100000 steps with 50000 reset in 157 ms.
Product exploration explored 100000 steps with 50000 reset in 164 ms.
Applying partial POR strategy [false, false, false, true]
Stuttering acceptance computed with spot in 96 ms :[(AND (NOT p0) (NOT p1)), (AND (NOT p0) (NOT p1)), (AND (NOT p0) (NOT p1)), (AND (NOT p0) (NOT p1))]
Support contains 4 out of 100 places. Attempting structural reductions.
Property had overlarge support with respect to TGBA, discarding it for now.
Starting structural reductions, iteration 0 : 100/100 places, 684/684 transitions.
Graph (trivial) has 640 edges and 100 vertex of which 96 / 100 are part of one of the 1 SCC in 0 ms
Free SCC test removed 95 places
Ensure Unique test removed 673 transitions
Reduce isomorphic transitions removed 673 transitions.
Applied a total of 1 rules in 2 ms. Remains 5 /100 variables (removed 95) and now considering 11/684 (removed 673) transitions.
[2021-05-09 06:22:48] [INFO ] Redundant transitions in 0 ms returned []
// Phase 1: matrix 11 rows 5 cols
[2021-05-09 06:22:48] [INFO ] Computed 1 place invariants in 0 ms
[2021-05-09 06:22:48] [INFO ] Dead Transitions using invariants and state equation in 8 ms returned []
Finished structural reductions, in 1 iterations. Remains : 5/100 places, 11/684 transitions.
Product exploration explored 100000 steps with 50000 reset in 141 ms.
Product exploration explored 100000 steps with 50000 reset in 146 ms.
[2021-05-09 06:22:48] [INFO ] Flatten gal took : 16 ms
[2021-05-09 06:22:48] [INFO ] Flatten gal took : 15 ms
[2021-05-09 06:22:48] [INFO ] Time to serialize gal into /tmp/LTL9665416946858836435.gal : 2 ms
[2021-05-09 06:22:48] [INFO ] Time to serialize properties into /tmp/LTL629670095378614205.ltl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /tmp/LTL9665416946858836435.gal, -t, CGAL, -LTL, /tmp/LTL629670095378614205.ltl, -c, -stutter-deadlock, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ltl-linux64 --gc-threshold 2000000 -i /tmp/LTL9665416946858836435.gal -t CGAL -LTL /tmp/LTL629670095378614205.ltl -c -stutter-deadlock --gen-order FOLLOW
Read 1 LTL properties
Checking formula 0 : !((X(F(("(cAMP__9_5_<=cAMP__3_1_)")||(X(X(("(cAMP__10_6_>cAMP__1_5_)")||(G(F("(cAMP__9_5_<=cAMP__3_1_)"))))))))))
Formula 0 simplified : !XF("(cAMP__9_5_<=cAMP__3_1_)" | XX("(cAMP__10_6_>cAMP__1_5_)" | GF"(cAMP__9_5_<=cAMP__3_1_)"))
Detected timeout of ITS tools.
[2021-05-09 06:23:03] [INFO ] Flatten gal took : 28 ms
[2021-05-09 06:23:03] [INFO ] Applying decomposition
[2021-05-09 06:23:03] [INFO ] Flatten gal took : 15 ms
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/convert-linux64, -i, /tmp/graph3617422924833796279.txt, -o, /tmp/graph3617422924833796279.bin, -w, /tmp/graph3617422924833796279.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/louvain-linux64, /tmp/graph3617422924833796279.bin, -l, -1, -v, -w, /tmp/graph3617422924833796279.weights, -q, 0, -e, 0.001], workingDir=null]
[2021-05-09 06:23:03] [INFO ] Decomposing Gal with order
[2021-05-09 06:23:03] [INFO ] Rewriting arrays to variables to allow decomposition.
[2021-05-09 06:23:03] [INFO ] Removed a total of 472 redundant transitions.
[2021-05-09 06:23:03] [INFO ] Flatten gal took : 69 ms
[2021-05-09 06:23:03] [INFO ] Fuse similar labels procedure discarded/fused a total of 48 labels/synchronizations in 17 ms.
[2021-05-09 06:23:03] [INFO ] Time to serialize gal into /tmp/LTL7740288395427885646.gal : 2 ms
[2021-05-09 06:23:03] [INFO ] Time to serialize properties into /tmp/LTL16056099803674322027.ltl : 0 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /tmp/LTL7740288395427885646.gal, -t, CGAL, -LTL, /tmp/LTL16056099803674322027.ltl, -c, -stutter-deadlock, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ltl-linux64 --gc-threshold 2000000 -i /tmp/LTL7740288395427885646.gal -t CGAL -LTL /tmp/LTL16056099803674322027.ltl -c -stutter-deadlock --gen-order FOLLOW
Read 1 LTL properties
Checking formula 0 : !((X(F(("(gu17.cAMP__9_5_<=gu17.cAMP__3_1_)")||(X(X(("(gu5.cAMP__10_6_>gu5.cAMP__1_5_)")||(G(F("(gu17.cAMP__9_5_<=gu17.cAMP__3_1_)"))))))))))
Formula 0 simplified : !XF("(gu17.cAMP__9_5_<=gu17.cAMP__3_1_)" | XX("(gu5.cAMP__10_6_>gu5.cAMP__1_5_)" | GF"(gu17.cAMP__9_5_<=gu17.cAMP__3_1_)"))
Detected timeout of ITS tools.
Built C files in :
/tmp/ltsmin4573338248004923950
[2021-05-09 06:23:18] [INFO ] Built C files in 6ms conformant to PINS (ltsmin variant)in folder :/tmp/ltsmin4573338248004923950
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202104292328/bin/include/, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/tmp/ltsmin4573338248004923950]
WARNING : LTS min runner thread failed on error :java.lang.RuntimeException: Compilation or link of executable timed out.java.util.concurrent.TimeoutException: Subprocess running CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202104292328/bin/include/, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/tmp/ltsmin4573338248004923950] killed by timeout after 1 SECONDS
java.lang.RuntimeException: Compilation or link of executable timed out.java.util.concurrent.TimeoutException: Subprocess running CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202104292328/bin/include/, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/tmp/ltsmin4573338248004923950] killed by timeout after 1 SECONDS
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:79)
at java.base/java.lang.Thread.run(Thread.java:834)
Treatment of property Diffusion2D-PT-D10N200-12 finished in 33231 ms.
Running Spot : CommandLine [args=[/home/mcc/BenchKit/bin//..//ltl2tgba, --hoaf=tv, -f, !(X((G(p1)||p0)))], workingDir=/home/mcc/execution]
Support contains 5 out of 100 places. Attempting structural reductions.
Starting structural reductions, iteration 0 : 100/100 places, 684/684 transitions.
Applied a total of 0 rules in 3 ms. Remains 100 /100 variables (removed 0) and now considering 684/684 (removed 0) transitions.
// Phase 1: matrix 684 rows 100 cols
[2021-05-09 06:23:19] [INFO ] Computed 1 place invariants in 2 ms
[2021-05-09 06:23:19] [INFO ] Implicit Places using invariants in 26 ms returned []
// Phase 1: matrix 684 rows 100 cols
[2021-05-09 06:23:19] [INFO ] Computed 1 place invariants in 7 ms
[2021-05-09 06:23:19] [INFO ] Implicit Places using invariants and state equation in 203 ms returned []
Implicit Place search using SMT with State Equation took 230 ms to find 0 implicit places.
// Phase 1: matrix 684 rows 100 cols
[2021-05-09 06:23:19] [INFO ] Computed 1 place invariants in 3 ms
[2021-05-09 06:23:20] [INFO ] Dead Transitions using invariants and state equation in 225 ms returned []
Finished structural reductions, in 1 iterations. Remains : 100/100 places, 684/684 transitions.
Stuttering acceptance computed with spot in 95 ms :[true, (AND (NOT p1) (NOT p0)), (NOT p1), (AND (NOT p1) (NOT p0))]
Running random walk in product with property : Diffusion2D-PT-D10N200-13 automaton TGBA [mat=[[{ cond=true, acceptance={0} source=0 dest: 0}], [{ cond=true, acceptance={} source=1 dest: 3}], [{ cond=(NOT p1), acceptance={} source=2 dest: 0}, { cond=p1, acceptance={} source=2 dest: 2}], [{ cond=(AND (NOT p0) (NOT p1)), acceptance={} source=3 dest: 0}, { cond=(AND (NOT p0) p1), acceptance={} source=3 dest: 2}]], initial=1, aps=[p1:(LEQ s30 s21), p0:(OR (GT s29 s18) (LEQ 3 s42))], nbAcceptance=1, properties=[trans-labels, explicit-labels, trans-acc, deterministic, no-univ-branch, unambiguous, semi-deterministic, terminal, very-weak, weak, inherently-weak], stateDesc=[null, null, null, null][false, false, false, false]]
Entered a terminal (fully accepting) state of product in 1202 steps with 0 reset in 10 ms.
FORMULA Diffusion2D-PT-D10N200-13 FALSE TECHNIQUES STUTTER_TEST
Treatment of property Diffusion2D-PT-D10N200-13 finished in 575 ms.
Running Spot : CommandLine [args=[/home/mcc/BenchKit/bin//..//ltl2tgba, --hoaf=tv, -f, !(F(G(p0)))], workingDir=/home/mcc/execution]
Support contains 2 out of 100 places. Attempting structural reductions.
Starting structural reductions, iteration 0 : 100/100 places, 684/684 transitions.
Graph (trivial) has 658 edges and 100 vertex of which 98 / 100 are part of one of the 1 SCC in 1 ms
Free SCC test removed 97 places
Ensure Unique test removed 679 transitions
Reduce isomorphic transitions removed 679 transitions.
Applied a total of 1 rules in 2 ms. Remains 3 /100 variables (removed 97) and now considering 5/684 (removed 679) transitions.
// Phase 1: matrix 5 rows 3 cols
[2021-05-09 06:23:20] [INFO ] Computed 1 place invariants in 1 ms
[2021-05-09 06:23:20] [INFO ] Implicit Places using invariants in 6 ms returned []
// Phase 1: matrix 5 rows 3 cols
[2021-05-09 06:23:20] [INFO ] Computed 1 place invariants in 0 ms
[2021-05-09 06:23:20] [INFO ] Implicit Places using invariants and state equation in 7 ms returned []
Implicit Place search using SMT with State Equation took 14 ms to find 0 implicit places.
[2021-05-09 06:23:20] [INFO ] Redundant transitions in 0 ms returned []
// Phase 1: matrix 5 rows 3 cols
[2021-05-09 06:23:20] [INFO ] Computed 1 place invariants in 0 ms
[2021-05-09 06:23:20] [INFO ] Dead Transitions using invariants and state equation in 8 ms returned []
Finished structural reductions, in 1 iterations. Remains : 3/100 places, 5/684 transitions.
Stuttering acceptance computed with spot in 26 ms :[(NOT p0)]
Running random walk in product with property : Diffusion2D-PT-D10N200-14 automaton TGBA [mat=[[{ cond=(NOT p0), acceptance={0} source=0 dest: 0}, { cond=p0, acceptance={} source=0 dest: 0}]], initial=0, aps=[p0:(GT s1 s0)], nbAcceptance=1, properties=[trans-labels, explicit-labels, trans-acc, complete, deterministic, no-univ-branch, unambiguous, semi-deterministic, stutter-invariant], stateDesc=[null][true]]
Stuttering criterion allowed to conclude after 0 steps with 0 reset in 0 ms.
FORMULA Diffusion2D-PT-D10N200-14 FALSE TECHNIQUES STUTTER_TEST
Treatment of property Diffusion2D-PT-D10N200-14 finished in 61 ms.
Running Spot : CommandLine [args=[/home/mcc/BenchKit/bin//..//ltl2tgba, --hoaf=tv, -f, !(X(X(F(p0))))], workingDir=/home/mcc/execution]
Support contains 2 out of 100 places. Attempting structural reductions.
Starting structural reductions, iteration 0 : 100/100 places, 684/684 transitions.
Applied a total of 0 rules in 3 ms. Remains 100 /100 variables (removed 0) and now considering 684/684 (removed 0) transitions.
// Phase 1: matrix 684 rows 100 cols
[2021-05-09 06:23:20] [INFO ] Computed 1 place invariants in 2 ms
[2021-05-09 06:23:20] [INFO ] Implicit Places using invariants in 19 ms returned []
// Phase 1: matrix 684 rows 100 cols
[2021-05-09 06:23:20] [INFO ] Computed 1 place invariants in 7 ms
[2021-05-09 06:23:20] [INFO ] Implicit Places using invariants and state equation in 112 ms returned []
Implicit Place search using SMT with State Equation took 132 ms to find 0 implicit places.
// Phase 1: matrix 684 rows 100 cols
[2021-05-09 06:23:20] [INFO ] Computed 1 place invariants in 2 ms
[2021-05-09 06:23:20] [INFO ] Dead Transitions using invariants and state equation in 234 ms returned []
Finished structural reductions, in 1 iterations. Remains : 100/100 places, 684/684 transitions.
Stuttering acceptance computed with spot in 74 ms :[(NOT p0), (NOT p0), (NOT p0)]
Running random walk in product with property : Diffusion2D-PT-D10N200-15 automaton TGBA [mat=[[{ cond=(NOT p0), acceptance={0} source=0 dest: 0}], [{ cond=true, acceptance={} source=1 dest: 0}], [{ cond=true, acceptance={} source=2 dest: 1}]], initial=2, aps=[p0:(LEQ s5 s82)], nbAcceptance=1, properties=[trans-labels, explicit-labels, trans-acc, deterministic, no-univ-branch, unambiguous, semi-deterministic, very-weak, weak, inherently-weak], stateDesc=[null, null, null][false, false, false]]
Product exploration explored 100000 steps with 33333 reset in 198 ms.
Product exploration explored 100000 steps with 33333 reset in 210 ms.
Knowledge obtained : [p0]
Stuttering acceptance computed with spot in 74 ms :[(NOT p0), (NOT p0), (NOT p0)]
Product exploration explored 100000 steps with 33333 reset in 157 ms.
Product exploration explored 100000 steps with 33333 reset in 149 ms.
Applying partial POR strategy [true, false, false]
Stuttering acceptance computed with spot in 76 ms :[(NOT p0), (NOT p0), (NOT p0)]
Support contains 2 out of 100 places. Attempting structural reductions.
Property had overlarge support with respect to TGBA, discarding it for now.
Starting structural reductions, iteration 0 : 100/100 places, 684/684 transitions.
Graph (trivial) has 658 edges and 100 vertex of which 98 / 100 are part of one of the 1 SCC in 1 ms
Free SCC test removed 97 places
Ensure Unique test removed 679 transitions
Reduce isomorphic transitions removed 679 transitions.
Applied a total of 1 rules in 3 ms. Remains 3 /100 variables (removed 97) and now considering 5/684 (removed 679) transitions.
[2021-05-09 06:23:21] [INFO ] Redundant transitions in 0 ms returned []
// Phase 1: matrix 5 rows 3 cols
[2021-05-09 06:23:21] [INFO ] Computed 1 place invariants in 1 ms
[2021-05-09 06:23:21] [INFO ] Dead Transitions using invariants and state equation in 7 ms returned []
Finished structural reductions, in 1 iterations. Remains : 3/100 places, 5/684 transitions.
Product exploration explored 100000 steps with 33333 reset in 218 ms.
Product exploration explored 100000 steps with 33333 reset in 178 ms.
[2021-05-09 06:23:22] [INFO ] Flatten gal took : 13 ms
[2021-05-09 06:23:22] [INFO ] Flatten gal took : 12 ms
[2021-05-09 06:23:22] [INFO ] Time to serialize gal into /tmp/LTL2018634466471962371.gal : 1 ms
[2021-05-09 06:23:22] [INFO ] Time to serialize properties into /tmp/LTL17125363373706924844.ltl : 107 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /tmp/LTL2018634466471962371.gal, -t, CGAL, -LTL, /tmp/LTL17125363373706924844.ltl, -c, -stutter-deadlock, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ltl-linux64 --gc-threshold 2000000 -i /tmp/LTL2018634466471962371.gal -t CGAL -LTL /tmp/LTL17125363373706924844.ltl -c -stutter-deadlock --gen-order FOLLOW
Read 1 LTL properties
Checking formula 0 : !((X(X(F("(cAMP__10_5_<=cAMP__8_2_)")))))
Formula 0 simplified : !XXF"(cAMP__10_5_<=cAMP__8_2_)"
Detected timeout of ITS tools.
[2021-05-09 06:23:37] [INFO ] Flatten gal took : 12 ms
[2021-05-09 06:23:37] [INFO ] Applying decomposition
[2021-05-09 06:23:37] [INFO ] Flatten gal took : 12 ms
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/convert-linux64, -i, /tmp/graph15112692174168625531.txt, -o, /tmp/graph15112692174168625531.bin, -w, /tmp/graph15112692174168625531.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/louvain-linux64, /tmp/graph15112692174168625531.bin, -l, -1, -v, -w, /tmp/graph15112692174168625531.weights, -q, 0, -e, 0.001], workingDir=null]
[2021-05-09 06:23:37] [INFO ] Decomposing Gal with order
[2021-05-09 06:23:37] [INFO ] Rewriting arrays to variables to allow decomposition.
[2021-05-09 06:23:37] [INFO ] Removed a total of 486 redundant transitions.
[2021-05-09 06:23:37] [INFO ] Flatten gal took : 61 ms
[2021-05-09 06:23:37] [INFO ] Fuse similar labels procedure discarded/fused a total of 24 labels/synchronizations in 7 ms.
[2021-05-09 06:23:37] [INFO ] Time to serialize gal into /tmp/LTL13869408908920781575.gal : 11 ms
[2021-05-09 06:23:37] [INFO ] Time to serialize properties into /tmp/LTL9134033860790828415.ltl : 0 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /tmp/LTL13869408908920781575.gal, -t, CGAL, -LTL, /tmp/LTL9134033860790828415.ltl, -c, -stutter-deadlock, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ltl-linux64 --gc-threshold 2000000 -i /tmp/LTL13869408908920781575.gal -t CGAL -LTL /tmp/LTL9134033860790828415.ltl -c -stutter-deadlock --gen-order FOLLOW
Read 1 LTL properties
Checking formula 0 : !((X(X(F("(gu18.cAMP__10_5_<=gu18.cAMP__8_2_)")))))
Formula 0 simplified : !XXF"(gu18.cAMP__10_5_<=gu18.cAMP__8_2_)"
Detected timeout of ITS tools.
Built C files in :
/tmp/ltsmin17796705003624516898
[2021-05-09 06:23:52] [INFO ] Built C files in 23ms conformant to PINS (ltsmin variant)in folder :/tmp/ltsmin17796705003624516898
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202104292328/bin/include/, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/tmp/ltsmin17796705003624516898]
WARNING : LTS min runner thread failed on error :java.lang.RuntimeException: Compilation or link of executable timed out.java.util.concurrent.TimeoutException: Subprocess running CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202104292328/bin/include/, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/tmp/ltsmin17796705003624516898] killed by timeout after 1 SECONDS
java.lang.RuntimeException: Compilation or link of executable timed out.java.util.concurrent.TimeoutException: Subprocess running CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202104292328/bin/include/, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/tmp/ltsmin17796705003624516898] killed by timeout after 1 SECONDS
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:79)
at java.base/java.lang.Thread.run(Thread.java:834)
Treatment of property Diffusion2D-PT-D10N200-15 finished in 33250 ms.
Using solver Z3 to compute partial order matrices.
Built C files in :
/tmp/ltsmin2801517001555468072
[2021-05-09 06:23:53] [INFO ] Computing symmetric may disable matrix : 684 transitions.
[2021-05-09 06:23:53] [INFO ] Computation of Complete disable matrix. took 2 ms. Total solver calls (SAT/UNSAT): 0(0/0)
[2021-05-09 06:23:53] [INFO ] Applying decomposition
[2021-05-09 06:23:53] [INFO ] Computing symmetric may enable matrix : 684 transitions.
[2021-05-09 06:23:53] [INFO ] Computation of Complete enable matrix. took 1 ms. Total solver calls (SAT/UNSAT): 0(0/0)
[2021-05-09 06:23:53] [INFO ] Flatten gal took : 12 ms
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/convert-linux64, -i, /tmp/graph12093774573351332543.txt, -o, /tmp/graph12093774573351332543.bin, -w, /tmp/graph12093774573351332543.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202104292328/bin/louvain-linux64, /tmp/graph12093774573351332543.bin, -l, -1, -v, -w, /tmp/graph12093774573351332543.weights, -q, 0, -e, 0.001], workingDir=null]
[2021-05-09 06:23:53] [INFO ] Decomposing Gal with order
[2021-05-09 06:23:53] [INFO ] Rewriting arrays to variables to allow decomposition.
[2021-05-09 06:23:53] [INFO ] Computing Do-Not-Accords matrix : 684 transitions.
[2021-05-09 06:23:53] [INFO ] Computation of Completed DNA matrix. took 23 ms. Total solver calls (SAT/UNSAT): 0(0/0)
[2021-05-09 06:23:53] [INFO ] Built C files in 108ms conformant to PINS (ltsmin variant)in folder :/tmp/ltsmin2801517001555468072
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202104292328/bin/include/, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/tmp/ltsmin2801517001555468072]
[2021-05-09 06:23:53] [INFO ] Removed a total of 486 redundant transitions.
[2021-05-09 06:23:53] [INFO ] Flatten gal took : 55 ms
[2021-05-09 06:23:53] [INFO ] Fuse similar labels procedure discarded/fused a total of 120 labels/synchronizations in 9 ms.
[2021-05-09 06:23:53] [INFO ] Time to serialize gal into /tmp/LTLCardinality13088406280605586715.gal : 9 ms
[2021-05-09 06:23:53] [INFO ] Time to serialize properties into /tmp/LTLCardinality2571741527503777906.ltl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /tmp/LTLCardinality13088406280605586715.gal, -t, CGAL, -LTL, /tmp/LTLCardinality2571741527503777906.ltl, -c, -stutter-deadlock, --gen-order, FOLLOW], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202104292328/bin/its-ltl-linux64 --gc-threshold 2000000 -i /tmp/LTLCardinality13088406280605586715.gal -t CGAL -LTL /tmp/LTLCardinality2571741527503777906.ltl -c -stutter-deadlock --gen-order FOLLOW
Read 4 LTL properties
Checking formula 0 : !((X(("(gi2.gi1.gu2.cAMP__10_4_<3)")||(X(("(gi2.gi1.gu12.cAMP__5_8_<1)")||(G(F("(gi2.gi1.gu12.cAMP__5_8_<1)"))))))))
Formula 0 simplified : !X("(gi2.gi1.gu2.cAMP__10_4_<3)" | X("(gi2.gi1.gu12.cAMP__5_8_<1)" | GF"(gi2.gi1.gu12.cAMP__5_8_<1)"))
Compilation finished in 3914 ms.
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/tmp/ltsmin2801517001555468072]
Link finished in 51 ms.
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202104292328/bin/pins2lts-mc-linux64, ./gal.so, --threads=8, --when, --ltl, X(((LTLAPp0==true)||X(((LTLAPp1==true)||[](<>((LTLAPp1==true))))))), --buchi-type=spotba], workingDir=/tmp/ltsmin2801517001555468072]
LTSmin run took 545 ms.
FORMULA Diffusion2D-PT-D10N200-07 TRUE TECHNIQUES EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202104292328/bin/pins2lts-mc-linux64, ./gal.so, --threads=8, --when, --ltl, X(<>(((LTLAPp2==true)||X(((LTLAPp3==true)||X(((LTLAPp2==true)||[](<>((LTLAPp3==true)))))))))), --buchi-type=spotba], workingDir=/tmp/ltsmin2801517001555468072]
LTSmin run took 342 ms.
FORMULA Diffusion2D-PT-D10N200-09 TRUE TECHNIQUES EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202104292328/bin/pins2lts-mc-linux64, ./gal.so, --threads=8, --when, --ltl, X(<>(((LTLAPp4==true)||X(X(((LTLAPp5==true)||[](<>((LTLAPp4==true))))))))), --buchi-type=spotba], workingDir=/tmp/ltsmin2801517001555468072]
LTSmin run took 439 ms.
FORMULA Diffusion2D-PT-D10N200-12 TRUE TECHNIQUES EXPLICIT LTSMIN SAT_SMT
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.ltsmin.binaries_1.0.0.202104292328/bin/pins2lts-mc-linux64, ./gal.so, --threads=8, --when, --ltl, X(X(<>((LTLAPp6==true)))), --buchi-type=spotba], workingDir=/tmp/ltsmin2801517001555468072]
LTSmin run took 604 ms.
FORMULA Diffusion2D-PT-D10N200-15 TRUE TECHNIQUES EXPLICIT LTSMIN SAT_SMT
ITS tools runner thread asked to quit. Dying gracefully.

BK_STOP 1620541440522

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/bin//../
+ BINDIR=/home/mcc/BenchKit/bin//../
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ LTLCardinality = StateSpace ]]
+ /home/mcc/BenchKit/bin//..//runeclipse.sh /home/mcc/execution LTLCardinality -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
++ cut -d . -f 9
++ ls /home/mcc/BenchKit/bin//..//itstools/plugins/fr.lip6.move.gal.application.pnmcc_1.0.0.202104292328.jar
+ VERSION=0
+ echo 'Running Version 0'
+ /home/mcc/BenchKit/bin//..//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination LTLCardinality -spotpath /home/mcc/BenchKit/bin//..//ltlfilt -z3path /home/mcc/BenchKit/bin//..//z3/bin/z3 -yices2path /home/mcc/BenchKit/bin//..//yices/bin/yices -its -ltsmin -greatspnpath /home/mcc/BenchKit/bin//..//greatspn/ -order META -manyOrder -smt -timeout 3600 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss128m -Xms40m -Xmx16000m

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Diffusion2D-PT-D10N200"
export BK_EXAMINATION="LTLCardinality"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
export BK_BIN_PATH="/home/mcc/BenchKit/bin/"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool itstools"
echo " Input is Diffusion2D-PT-D10N200, examination is LTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r083-tall-162048875000100"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/Diffusion2D-PT-D10N200.tgz
mv Diffusion2D-PT-D10N200 execution
cd execution
if [ "LTLCardinality" = "ReachabilityDeadlock" ] || [ "LTLCardinality" = "UpperBounds" ] || [ "LTLCardinality" = "QuasiLiveness" ] || [ "LTLCardinality" = "StableMarking" ] || [ "LTLCardinality" = "Liveness" ] || [ "LTLCardinality" = "OneSafe" ] || [ "LTLCardinality" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "LTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "LTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "LTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property LTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "LTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' LTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "LTLCardinality" = "ReachabilityDeadlock" ] || [ "LTLCardinality" = "QuasiLiveness" ] || [ "LTLCardinality" = "StableMarking" ] || [ "LTLCardinality" = "Liveness" ] || [ "LTLCardinality" = "OneSafe" ] ; then
echo "FORMULA_NAME LTLCardinality"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;