Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Formatting '/local/x2003239/mcc2020-input.r111-csrt-158961257100089.qcow2', fmt=qcow2 size=4294967296 backing_file=/local/x2003239/mcc2020-input.qcow2 encryption=off cluster_size=65536 lazy_refcounts=off refcount_bits=16
Waiting for the VM to be ready (probing ssh)
.......................................................................................................................................................................................................................................................................................................................................................................
=====================================================================
Generated by BenchKit 2-4028
Executing tool itstools
Input is MAPKbis-PT-5310, examination is LTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r111-csrt-158961257100089
=====================================================================

--------------------
preparation of the directory to be used:
/home/mcc/execution
total 380K
-rw-r--r-- 1 mcc users 4.1K Apr 27 15:14 CTLCardinality.txt
-rw-r--r-- 1 mcc users 20K Apr 27 15:14 CTLCardinality.xml
-rw-r--r-- 1 mcc users 5.3K Apr 27 15:14 CTLFireability.txt
-rw-r--r-- 1 mcc users 19K Apr 27 15:14 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K Apr 27 15:14 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.5K Apr 27 15:14 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 4.0K Apr 27 15:14 LTLCardinality.txt
-rw-r--r-- 1 mcc users 26K Apr 28 14:01 LTLCardinality.xml
-rw-r--r-- 1 mcc users 6.0K Apr 27 15:14 LTLFireability.txt
-rw-r--r-- 1 mcc users 21K Apr 28 14:01 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.1K Apr 27 15:14 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 18K Apr 27 15:14 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 5.8K Apr 27 15:14 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 17K Apr 27 15:14 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K Apr 27 15:14 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K Apr 27 15:14 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 Apr 27 15:14 equiv_col
-rw-r--r-- 1 mcc users 5 Apr 27 15:14 instance
-rw-r--r-- 1 mcc users 6 Apr 27 15:14 iscolored
-rw-r--r-- 1 mcc users 170K Apr 27 15:14 model.pnml

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME MAPKbis-PT-5310-00
FORMULA_NAME MAPKbis-PT-5310-01
FORMULA_NAME MAPKbis-PT-5310-02
FORMULA_NAME MAPKbis-PT-5310-03
FORMULA_NAME MAPKbis-PT-5310-04
FORMULA_NAME MAPKbis-PT-5310-05
FORMULA_NAME MAPKbis-PT-5310-06
FORMULA_NAME MAPKbis-PT-5310-07
FORMULA_NAME MAPKbis-PT-5310-08
FORMULA_NAME MAPKbis-PT-5310-09
FORMULA_NAME MAPKbis-PT-5310-10
FORMULA_NAME MAPKbis-PT-5310-11
FORMULA_NAME MAPKbis-PT-5310-12
FORMULA_NAME MAPKbis-PT-5310-13
FORMULA_NAME MAPKbis-PT-5310-14
FORMULA_NAME MAPKbis-PT-5310-15

=== Now, execution of the tool begins

BK_START 1589827220464

[2020-05-18 18:40:22] [INFO ] Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, LTLCardinality, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -greatspnpath, /home/mcc/BenchKit//greatspn/, -order, META, -manyOrder, -smt, -timeout, 3600]
[2020-05-18 18:40:22] [INFO ] Parsing pnml file : /home/mcc/execution/model.pnml
[2020-05-18 18:40:22] [INFO ] Load time of PNML (sax parser for PT used): 84 ms
[2020-05-18 18:40:22] [INFO ] Transformed 106 places.
[2020-05-18 18:40:22] [INFO ] Transformed 173 transitions.
[2020-05-18 18:40:22] [INFO ] Found NUPN structural information;
[2020-05-18 18:40:22] [INFO ] Parsed PT model containing 106 places and 173 transitions in 162 ms.
Deduced a syphon composed of 11 places in 2 ms
Reduce places removed 15 places and 41 transitions.
Parsed 16 properties from file /home/mcc/execution/LTLCardinality.xml in 25 ms.
Working with output stream class java.io.PrintStream
Incomplete random walk after 100000 steps, including 0 resets, run finished after 314 ms. (steps per millisecond=318 ) properties seen :[1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 1, 0, 1, 1, 0, 1, 1, 1, 0, 1, 1]
[2020-05-18 18:40:23] [INFO ] Flow matrix only has 84 transitions (discarded 48 similar events)
// Phase 1: matrix 84 rows 91 cols
[2020-05-18 18:40:23] [INFO ] Computed 49 place invariants in 4 ms
[2020-05-18 18:40:23] [INFO ] [Real]Absence check using 49 positive place invariants in 53 ms returned sat
[2020-05-18 18:40:23] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-18 18:40:23] [INFO ] [Real]Absence check using state equation in 75 ms returned sat
[2020-05-18 18:40:23] [INFO ] Solution in real domain found non-integer solution.
[2020-05-18 18:40:23] [INFO ] [Nat]Absence check using 49 positive place invariants in 10 ms returned unsat
[2020-05-18 18:40:23] [INFO ] [Real]Absence check using 49 positive place invariants in 6 ms returned unsat
[2020-05-18 18:40:23] [INFO ] [Real]Absence check using 49 positive place invariants in 13 ms returned unsat
[2020-05-18 18:40:23] [INFO ] [Real]Absence check using 49 positive place invariants in 14 ms returned sat
[2020-05-18 18:40:23] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-18 18:40:23] [INFO ] [Real]Absence check using state equation in 65 ms returned sat
[2020-05-18 18:40:23] [INFO ] Solution in real domain found non-integer solution.
[2020-05-18 18:40:23] [INFO ] [Nat]Absence check using 49 positive place invariants in 6 ms returned unsat
[2020-05-18 18:40:23] [INFO ] [Real]Absence check using 49 positive place invariants in 8 ms returned unsat
[2020-05-18 18:40:23] [INFO ] [Real]Absence check using 49 positive place invariants in 12 ms returned unsat
[2020-05-18 18:40:23] [INFO ] [Real]Absence check using 49 positive place invariants in 19 ms returned sat
[2020-05-18 18:40:23] [INFO ] [Real]Adding state equation constraints to refine reachable states.
[2020-05-18 18:40:23] [INFO ] [Real]Absence check using state equation in 51 ms returned sat
[2020-05-18 18:40:23] [INFO ] Solution in real domain found non-integer solution.
[2020-05-18 18:40:23] [INFO ] [Nat]Absence check using 49 positive place invariants in 6 ms returned unsat
Successfully simplified 7 atomic propositions for a total of 7 simplifications.
[2020-05-18 18:40:24] [INFO ] Found a total of 7 fixed domain variables (out of 91 variables) in GAL type petri
[2020-05-18 18:40:24] [INFO ] Found a total of 7 constant array cells/variables (out of 91 variables) in type petri
[2020-05-18 18:40:24] [INFO ] FRS2_equals_0,ATM_equals_0,FGFR3_equals_0,TAK1_equals_0,TGFBR_equals_0,SMAD_equals_0,TAOK_equals_0,
[2020-05-18 18:40:24] [INFO ] Removed 7 constant variables :FRS2_equals_0=1, ATM_equals_0=1, FGFR3_equals_0=1, TAK1_equals_0=1, TGFBR_equals_0=1, SMAD_equals_0=1, TAOK_equals_0=1
[2020-05-18 18:40:24] [INFO ] Simplified 23 expressions due to constant valuations.
[2020-05-18 18:40:24] [INFO ] Initial state reduction rules for CTL removed 8 formulas.
[2020-05-18 18:40:24] [INFO ] Flatten gal took : 66 ms
FORMULA MAPKbis-PT-5310-14 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA MAPKbis-PT-5310-13 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA MAPKbis-PT-5310-11 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA MAPKbis-PT-5310-09 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA MAPKbis-PT-5310-08 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA MAPKbis-PT-5310-07 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA MAPKbis-PT-5310-06 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA MAPKbis-PT-5310-03 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
[2020-05-18 18:40:24] [INFO ] Flatten gal took : 17 ms
[2020-05-18 18:40:24] [INFO ] Initial state reduction rules for CTL removed 1 formulas.
FORMULA MAPKbis-PT-5310-04 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
Using solver Z3 to compute partial order matrices.
[2020-05-18 18:40:24] [INFO ] Applying decomposition
Built C files in :
/home/mcc/execution
[2020-05-18 18:40:24] [INFO ] Flatten gal took : 34 ms
[2020-05-18 18:40:24] [INFO ] Input system was already deterministic with 132 transitions.
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202005100927/bin/convert-linux64, -i, /tmp/graph7131864707303214915.txt, -o, /tmp/graph7131864707303214915.bin, -w, /tmp/graph7131864707303214915.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.202005100927/bin/louvain-linux64, /tmp/graph7131864707303214915.bin, -l, -1, -v, -w, /tmp/graph7131864707303214915.weights, -q, 0, -e, 0.001], workingDir=null]
Presburger conditions satisfied. Using coverability to approximate state space in K-Induction.
Normalized transition count is 84 out of 132 initially.
// Phase 1: matrix 84 rows 84 cols
[2020-05-18 18:40:24] [INFO ] Computed 42 place invariants in 2 ms
inv : Growth_Arrest_equals_0 + Growth_Arrest_equals_1 = 1
inv : FOS_equals_0 + FOS_equals_1 = 1
inv : AKT_0 + AKT_equals_1 = 1
inv : MDM2_equals_0 + MDM2_equals_1 = 1
inv : PTEN_equals_0 + PTEN_equals_1 = 1
inv : RAF_equals_0 + RAF_equals_1 = 1
inv : PKC_equals_0 + PKC_equals_1 = 1
inv : Apoptosis_equals_0 + Apoptosis_equals_1 = 1
inv : SOS_equals_0 + SOS_equals_1 = 1
inv : MTK1_equals_0 + MTK1_equals_1 = 1
inv : ATF2_equals_0 + ATF2_equals_1 = 1
inv : EGFR_equals_0 + EGFR_equals_1 = 1
inv : ELK1_equals_0 + ELK1_equals_1 = 1
inv : MAP3K1_3_equals_0 + MAP3K1_3_equals_1 = 1
inv : MYC_equals_0 + MYC_equals_1 = 1
inv : p53_equals_0 + p53_equals_1 = 1
inv : RSK_equals_0 + RSK_equals_1 = 1
inv : MEK1_2_equals_0 + MEK1_2_equals_1 = 1
inv : GADD45_equals_0 + GADD45_equals_1 = 1
inv : PPP2CA_equals_0 + PPP2CA_equals_1 = 1
inv : CREB_equals_0 + CREB_equals_1 = 1
inv : p14_equals_0 + p14_equals_1 = 1
inv : Proliferation_equals_0 + Proliferation_equals_1 = 1
inv : BCL2_equals_0 + BCL2_equals_1 = 1
inv : GRB2_equals_0 + GRB2_equals_1 = 1
inv : JNK_equals_0 + JNK_equals_1 = 1
inv : PI3K_equals_0 + PI3K_equals_1 = 1
inv : SPRY_equals_0 + SPRY_equals_1 = 1
inv : MAX_equals_0 + MAX_equals_1 = 1
inv : FOXO3_equals_0 + FOXO3_equals_1 = 1
inv : p38_equals_0 + p38_equals_1 = 1
inv : GAB1_equals_0 + GAB1_equals_1 = 1
inv : PLCG_equals_0 + PLCG_equals_1 = 1
inv : MSK_equals_0 + MSK_equals_1 = 1
inv : p21_equals_0 + p21_equals_1 = 1
inv : DUSP1_equals_0 + DUSP1_equals_1 = 1
inv : JUN_equals_0 + JUN_equals_1 = 1
inv : PDK1_equals_0 + PDK1_equals_1 = 1
inv : AP1_equals_0 + AP1_equals_1 = 1
inv : ERK_equals_0 + ERK_equals_1 = 1
inv : RAS_equals_0 + RAS_equals_1 = 1
inv : p70_equals_0 + p70_equals_1 = 1
Total of 42 invariants.
[2020-05-18 18:40:24] [INFO ] Computed 42 place invariants in 3 ms
[2020-05-18 18:40:24] [INFO ] Decomposing Gal with order
[2020-05-18 18:40:24] [INFO ] Rewriting arrays to variables to allow decomposition.
[2020-05-18 18:40:24] [INFO ] Removed a total of 173 redundant transitions.
[2020-05-18 18:40:24] [INFO ] Flatten gal took : 52 ms
[2020-05-18 18:40:24] [INFO ] Fuse similar labels procedure discarded/fused a total of 0 labels/synchronizations in 5 ms.
[2020-05-18 18:40:24] [INFO ] Time to serialize gal into /home/mcc/execution/LTLCardinality.pnml.gal : 7 ms
[2020-05-18 18:40:24] [INFO ] Time to serialize properties into /home/mcc/execution/LTLCardinality.ltl : 1 ms
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64, --gc-threshold, 2000000, -i, /home/mcc/execution/LTLCardinality.pnml.gal, -t, CGAL, -LTL, /home/mcc/execution/LTLCardinality.ltl, -c, -stutter-deadlock], workingDir=/home/mcc/execution]

its-ltl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.202005100927/bin/its-ltl-linux64 --gc-threshold 2000000 -i /home/mcc/execution/LTLCardinality.pnml.gal -t CGAL -LTL /home/mcc/execution/LTLCardinality.ltl -c -stutter-deadlock
Read 7 LTL properties
Checking formula 0 : !((X(("((i2.u33.RSK_equals_0==0)||(i8.i1.u40.p70_equals_1==1))")U(!(X(F("((i2.u33.RSK_equals_0!=0)&&(i8.i1.u40.p70_equals_1!=1))")))))))
Formula 0 simplified : !X("((i2.u33.RSK_equals_0==0)||(i8.i1.u40.p70_equals_1==1))" U !XF"((i2.u33.RSK_equals_0!=0)&&(i8.i1.u40.p70_equals_1!=1))")
built 28 ordering constraints for composite.
built 17 ordering constraints for composite.
built 12 ordering constraints for composite.
built 8 ordering constraints for composite.
built 13 ordering constraints for composite.
built 7 ordering constraints for composite.
built 9 ordering constraints for composite.
built 7 ordering constraints for composite.
built 17 ordering constraints for composite.
built 14 ordering constraints for composite.
built 6 ordering constraints for composite.
built 19 ordering constraints for composite.
built 10 ordering constraints for composite.
built 18 ordering constraints for composite.
built 18 ordering constraints for composite.
built 9 ordering constraints for composite.
built 5 ordering constraints for composite.
built 6 ordering constraints for composite.
built 15 ordering constraints for composite.
[2020-05-18 18:40:24] [INFO ] Proved 84 variables to be positive in 242 ms
[2020-05-18 18:40:24] [INFO ] Computing symmetric may disable matrix : 132 transitions.
[2020-05-18 18:40:24] [INFO ] Computation of disable matrix completed :0/132 took 0 ms. Total solver calls (SAT/UNSAT): 0(0/0)
[2020-05-18 18:40:24] [INFO ] Computation of Complete disable matrix. took 9 ms. Total solver calls (SAT/UNSAT): 0(0/0)
[2020-05-18 18:40:24] [INFO ] Computing symmetric may enable matrix : 132 transitions.
[2020-05-18 18:40:24] [INFO ] Computation of Complete enable matrix. took 8 ms. Total solver calls (SAT/UNSAT): 0(0/0)
Reverse transition relation is NOT exact ! Due to transitions ERK_equals_0_to_ERK_equals_1_when_MEK1_2_equals_1, MAP3K1_3_equals_1_to_MAP3K1_3_equals_0_when_RAS_equals_0, MTK1_equals_1_to_MTK1_equals_0_when_GADD45_equals_0, PPP2CA_equals_1_to_PPP2CA_equals_0_when_p38_equals_0, SOS_equals_1_to_SOS_equals_0_when_RSK_equals_1, p53_equals_1_to_p53_equals_0_when_ATM_equals_0_and_p38_equals_0, i1.MEK1_2_equals_1_to_MEK1_2_equals_0_when_AP1_equals_1, i1.i1.MEK1_2_equals_1_to_MEK1_2_equals_0_when_PPP2CA_equals_1, i2.RSK_equals_1_to_RSK_equals_0_when_ERK_equals_0, i4.p53_equals_1_to_p53_equals_0_when_ATM_equals_0_and_MDM2_equals_1, i4.GADD45_equals_0_to_GADD45_equals_1_when_p53_equals_1, i6.SOS_equals_1_to_SOS_equals_0_when_GRB2_equals_0, i6.RAS_equals_0_to_RAS_equals_1_when_PLCG_equals_1, i6.PLCG_equals_0_to_PLCG_equals_1_when_EGFR_equals_1, i6.EGFR_equals_1_to_EGFR_equals_0_when_PKC_equals_1, i6.i0.EGFR_equals_1_to_EGFR_equals_0_when_GRB2_equals_1, i6.i1.RAS_equals_0_to_RAS_equals_1_when_SOS_equals_1, i6.i2.PKC_equals_1_to_PKC_equals_0_when_PLCG_equals_0, i7.p38_equals_0_to_p38_equals_1_when_DUSP1_equals_1_and_MAP3K1_3_equals_1_and_MTK1_equals_1, i7.p38_equals_0_to_p38_equals_1_when_DUSP1_equals_0_and_MTK1_equals_1, i7.p38_equals_0_to_p38_equals_1_when_DUSP1_equals_0_and_MAP3K1_3_equals_1, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :2/109/21/132
[2020-05-18 18:40:25] [INFO ] Computing symmetric co enabling matrix : 132 transitions.
[2020-05-18 18:40:27] [INFO ] Computation of co-enabling matrix(36/132) took 2282 ms. Total solver calls (SAT/UNSAT): 597(286/311)
5 unique states visited
5 strongly connected components in search stack
5 transitions explored
5 items max in DFS search stack
311 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,3.16294,95120,1,0,164783,85,2164,316370,97,212,224351
an accepting run exists (use option '-e' to print it)
Formula 0 is FALSE accepting run found.
FORMULA MAPKbis-PT-5310-00 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 1 : !((X(G(!(("((i4.u36.p14_equals_0==0)||(i1.i0.u2.ATF2_equals_0==1))")U(F(!(X("((i4.u36.p14_equals_0==0)||(i1.i0.u2.ATF2_equals_0==1))")))))))))
Formula 1 simplified : !XG!("((i4.u36.p14_equals_0==0)||(i1.i0.u2.ATF2_equals_0==1))" U F!X"((i4.u36.p14_equals_0==0)||(i1.i0.u2.ATF2_equals_0==1))")
[2020-05-18 18:40:30] [INFO ] Computation of Finished co-enabling matrix. took 5124 ms. Total solver calls (SAT/UNSAT): 1358(600/758)
[2020-05-18 18:40:30] [INFO ] Computing Do-Not-Accords matrix : 132 transitions.
[2020-05-18 18:40:30] [INFO ] Computation of Completed DNA matrix. took 4 ms. Total solver calls (SAT/UNSAT): 0(0/0)
[2020-05-18 18:40:30] [INFO ] Built C files in 6285ms conformant to PINS in folder :/home/mcc/execution
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O2, model.c], workingDir=/home/mcc/execution]
5 unique states visited
5 strongly connected components in search stack
5 transitions explored
5 items max in DFS search stack
441 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,7.56923,204756,1,0,373598,85,2222,722014,98,213,441557
an accepting run exists (use option '-e' to print it)
Formula 1 is FALSE accepting run found.
FORMULA MAPKbis-PT-5310-01 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 2 : !((F(G(F((X("((i6.i1.u34.SOS_equals_1==0)||(i1.i0.u16.JUN_equals_1==1))"))U((G("((i1.i1.u28.PPP2CA_equals_0==0)||(i6.i2.u26.PKC_equals_1==1))"))&&("(i1.i0.u1.AP1_equals_0==1)")))))))
Formula 2 simplified : !FGF(X"((i6.i1.u34.SOS_equals_1==0)||(i1.i0.u16.JUN_equals_1==1))" U ("(i1.i0.u1.AP1_equals_0==1)" & G"((i1.i1.u28.PPP2CA_equals_0==0)||(i6.i2.u26.PKC_equals_1==1))"))
Compilation finished in 2076 ms.
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/home/mcc/execution]
Link finished in 66 ms.
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, <>([](<>((X((LTLAP3==true)))U(( []((LTLAP4==true)) ) && ( (LTLAP5==true) ))))), --buchi-type=spotba], workingDir=/home/mcc/execution]
/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc: error while loading shared libraries: libltdl.so.7: cannot open shared object file: No such file or directory
WARNING : LTS min runner thread failed on error :java.lang.RuntimeException: Unexpected exception when executing ltsmin :CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, <>([](<>((X((LTLAP3==true)))U(( []((LTLAP4==true)) ) && ( (LTLAP5==true) ))))), --buchi-type=spotba], workingDir=/home/mcc/execution]
127
java.lang.RuntimeException: Unexpected exception when executing ltsmin :CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=8, --when, --ltl, <>([](<>((X((LTLAP3==true)))U(( []((LTLAP4==true)) ) && ( (LTLAP5==true) ))))), --buchi-type=spotba], workingDir=/home/mcc/execution]
127
at fr.lip6.move.gal.application.LTSminRunner.checkProperty(LTSminRunner.java:170)
at fr.lip6.move.gal.application.LTSminRunner.access$10(LTSminRunner.java:124)
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:93)
at java.base/java.lang.Thread.run(Thread.java:834)
2 unique states visited
2 strongly connected components in search stack
3 transitions explored
2 items max in DFS search stack
77 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,8.34321,221364,1,0,407070,85,2279,802030,99,213,468468
an accepting run exists (use option '-e' to print it)
Formula 2 is FALSE accepting run found.
FORMULA MAPKbis-PT-5310-02 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 3 : !((X((((X("((i1.i0.u16.JUN_equals_1==0)||(i5.u18.MAX_equals_0==1))"))U(G("((i1.i1.u28.PPP2CA_equals_1==0)||(i8.i0.u37.p21_equals_1==1))")))&&((X("((i0.i0.u0.AKT_0==0)||(i3.u24.PDK1_equals_0==1))"))U("((i1.i1.u28.PPP2CA_equals_1==0)||(i8.i0.u37.p21_equals_1==1))")))U(F(G("((i1.i0.u16.JUN_equals_1==0)||(i5.u18.MAX_equals_0==1))"))))))
Formula 3 simplified : !X(((X"((i1.i0.u16.JUN_equals_1==0)||(i5.u18.MAX_equals_0==1))" U G"((i1.i1.u28.PPP2CA_equals_1==0)||(i8.i0.u37.p21_equals_1==1))") & (X"((i0.i0.u0.AKT_0==0)||(i3.u24.PDK1_equals_0==1))" U "((i1.i1.u28.PPP2CA_equals_1==0)||(i8.i0.u37.p21_equals_1==1))")) U FG"((i1.i0.u16.JUN_equals_1==0)||(i5.u18.MAX_equals_0==1))")
2 unique states visited
2 strongly connected components in search stack
2 transitions explored
2 items max in DFS search stack
1253 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,20.8804,508984,1,0,966030,85,2307,1.72892e+06,100,217,998778
an accepting run exists (use option '-e' to print it)
Formula 3 is FALSE accepting run found.
FORMULA MAPKbis-PT-5310-05 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 4 : !((X(X(X(!(G("(i4.u29.PTEN_equals_0==0)")))))))
Formula 4 simplified : !XXX!G"(i4.u29.PTEN_equals_0==0)"
4 unique states visited
0 strongly connected components in search stack
3 transitions explored
4 items max in DFS search stack
0 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,20.882,508984,1,0,966030,85,2328,1.72892e+06,100,217,998790
no accepting run found
Formula 4 is TRUE no accepting run found.
FORMULA MAPKbis-PT-5310-10 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 5 : !((!(F(G(F(X("((i4.u12.GADD45_equals_1==0)||(i7.u15.DUSP1_equals_1==1))")))))))
Formula 5 simplified : FGFX"((i4.u12.GADD45_equals_1==0)||(i7.u15.DUSP1_equals_1==1))"
2 unique states visited
1 strongly connected components in search stack
3 transitions explored
2 items max in DFS search stack
1 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,20.8943,509500,1,0,966787,85,2359,1.7312e+06,100,217,999363
an accepting run exists (use option '-e' to print it)
Formula 5 is FALSE accepting run found.
FORMULA MAPKbis-PT-5310-12 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Checking formula 6 : !(((F("(i8.i1.u40.p70_equals_1==1)"))U(F(!(X("(i1.i0.u16.JUN_equals_0==1)"))))))
Formula 6 simplified : !(F"(i8.i1.u40.p70_equals_1==1)" U F!X"(i1.i0.u16.JUN_equals_0==1)")
3 unique states visited
3 strongly connected components in search stack
3 transitions explored
3 items max in DFS search stack
13 ticks for the emptiness check
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
STATS,0,21.0219,513988,1,0,978312,85,2380,1.74586e+06,100,217,1016711
an accepting run exists (use option '-e' to print it)
Formula 6 is FALSE accepting run found.
FORMULA MAPKbis-PT-5310-15 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
ITS tools runner thread asked to quit. Dying gracefully.

BK_STOP 1589827247980

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ LTLCardinality = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution LTLCardinality -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -timeout 3600
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination LTLCardinality -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -greatspnpath /home/mcc/BenchKit//greatspn/ -order META -manyOrder -smt -timeout 3600 -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss128m -Xms40m -Xmx16000m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="MAPKbis-PT-5310"
export BK_EXAMINATION="LTLCardinality"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-4028"
echo " Executing tool itstools"
echo " Input is MAPKbis-PT-5310, examination is LTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r111-csrt-158961257100089"
echo "====================================================================="
echo
echo "--------------------"
echo "preparation of the directory to be used:"

tar xzf /home/mcc/BenchKit/INPUTS/MAPKbis-PT-5310.tgz
mv MAPKbis-PT-5310 execution
cd execution
if [ "LTLCardinality" = "ReachabilityDeadlock" ] || [ "LTLCardinality" = "UpperBounds" ] || [ "LTLCardinality" = "QuasiLiveness" ] || [ "LTLCardinality" = "StableMarking" ] || [ "LTLCardinality" = "Liveness" ] || [ "LTLCardinality" = "OneSafe" ] || [ "LTLCardinality" = "StateSpace" ]; then
rm -f GenericPropertiesVerdict.xml
fi
pwd
ls -lh

echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "LTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "LTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "LTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property LTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "LTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' LTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ "LTLCardinality" = "ReachabilityDeadlock" ] || [ "LTLCardinality" = "QuasiLiveness" ] || [ "LTLCardinality" = "StableMarking" ] || [ "LTLCardinality" = "Liveness" ] || [ "LTLCardinality" = "OneSafe" ] ; then
echo "FORMULA_NAME LTLCardinality"
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;